Results 21 - 40 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26820 | 3' | -58 | NC_005809.1 | + | 28673 | 0.7 | 0.250881 |
Target: 5'- gGCGGCCUCGCCAGCgCgGC-GcGCCa-- -3' miRNA: 3'- -UGCUGGAGCGGUUG-GaCGaC-CGGaac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 8917 | 0.7 | 0.271152 |
Target: 5'- gGCGACCgagGCCAACgC-GCUGGCCc-- -3' miRNA: 3'- -UGCUGGag-CGGUUG-GaCGACCGGaac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 21177 | 0.7 | 0.278195 |
Target: 5'- cGCGGCCUgcUGCgCGGCCugcUGCUGGUCUg- -3' miRNA: 3'- -UGCUGGA--GCG-GUUGG---ACGACCGGAac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 20217 | 0.7 | 0.285384 |
Target: 5'- aGCGcCCgcgGCCGG-CUGUUGGCCUUGg -3' miRNA: 3'- -UGCuGGag-CGGUUgGACGACCGGAAC- -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 34337 | 0.7 | 0.285384 |
Target: 5'- aGCGACUUCGCCGACgaggGCacGGCCg-- -3' miRNA: 3'- -UGCUGGAGCGGUUGga--CGa-CCGGaac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 480 | 0.7 | 0.285384 |
Target: 5'- uACGGCCgacgaucacCGCCGugCUGCUGGUg--- -3' miRNA: 3'- -UGCUGGa--------GCGGUugGACGACCGgaac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 27662 | 0.7 | 0.285384 |
Target: 5'- gACGACCaCGCCAucuggcgccGCCUGCUG-CCg-- -3' miRNA: 3'- -UGCUGGaGCGGU---------UGGACGACcGGaac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 20313 | 0.7 | 0.285384 |
Target: 5'- gGCGGCCggUUGCgAugCggGCUGGCCUUc -3' miRNA: 3'- -UGCUGG--AGCGgUugGa-CGACCGGAAc -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 2300 | 0.69 | 0.292719 |
Target: 5'- cGCGGCCacgCGCC-GCCUGCUGcGCgUg- -3' miRNA: 3'- -UGCUGGa--GCGGuUGGACGAC-CGgAac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 731 | 0.69 | 0.307827 |
Target: 5'- gGCGGCUUUGCCGACaacGCcGGCCa-- -3' miRNA: 3'- -UGCUGGAGCGGUUGga-CGaCCGGaac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 1396 | 0.69 | 0.323525 |
Target: 5'- cACGGCUUCcucgcgcuuGUCGGCCUGgUGGCCg-- -3' miRNA: 3'- -UGCUGGAG---------CGGUUGGACgACCGGaac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 24623 | 0.68 | 0.339811 |
Target: 5'- cCGGCCUCGCCAucGCCgcGCUGcGCg--- -3' miRNA: 3'- uGCUGGAGCGGU--UGGa-CGAC-CGgaac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 19995 | 0.68 | 0.356683 |
Target: 5'- cGCGuagaaCUCGCCAACUUGCUcGGCa--- -3' miRNA: 3'- -UGCug---GAGCGGUUGGACGA-CCGgaac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 531 | 0.68 | 0.365337 |
Target: 5'- cCGACCgcgacagCGCCcGCaaGCUGGCCg-- -3' miRNA: 3'- uGCUGGa------GCGGuUGgaCGACCGGaac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 34943 | 0.68 | 0.374136 |
Target: 5'- uUGACCUCGgCGGCCgGCUuGCCg-- -3' miRNA: 3'- uGCUGGAGCgGUUGGaCGAcCGGaac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 32989 | 0.67 | 0.383076 |
Target: 5'- cUGGCCgaacaGCCAGCCgUGCaGGCCgUGg -3' miRNA: 3'- uGCUGGag---CGGUUGG-ACGaCCGGaAC- -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 13083 | 0.67 | 0.383076 |
Target: 5'- -aGGCCgUCGCCAcuGCgCUGCgcGGCCUg- -3' miRNA: 3'- ugCUGG-AGCGGU--UG-GACGa-CCGGAac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 2497 | 0.67 | 0.383076 |
Target: 5'- cCGAUCUUcgagGCCGGCCUGCUG-CCg-- -3' miRNA: 3'- uGCUGGAG----CGGUUGGACGACcGGaac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 28877 | 0.67 | 0.392158 |
Target: 5'- cACGuCCUCGCUgcuGGCguagUUGCUGGCCg-- -3' miRNA: 3'- -UGCuGGAGCGG---UUG----GACGACCGGaac -5' |
|||||||
26820 | 3' | -58 | NC_005809.1 | + | 36961 | 0.67 | 0.401378 |
Target: 5'- cAUGAUuagcugCUUGCCGGCCuUGUccuUGGCCUUGu -3' miRNA: 3'- -UGCUG------GAGCGGUUGG-ACG---ACCGGAAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home