miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26820 3' -58 NC_005809.1 + 2662 1.07 0.000504
Target:  5'- uACGACCUCGCCAACCUGCUGGCCUUGc -3'
miRNA:   3'- -UGCUGGAGCGGUUGGACGACCGGAAC- -5'
26820 3' -58 NC_005809.1 + 12086 0.82 0.034182
Target:  5'- -aGACCUCGCCGGCCacggccgcgcUGCUGGCCgacgUGg -3'
miRNA:   3'- ugCUGGAGCGGUUGG----------ACGACCGGa---AC- -5'
26820 3' -58 NC_005809.1 + 2080 0.78 0.067352
Target:  5'- cGCGACUUCGCCAGCgaGCgccugGGCCUc- -3'
miRNA:   3'- -UGCUGGAGCGGUUGgaCGa----CCGGAac -5'
26820 3' -58 NC_005809.1 + 37899 0.78 0.071398
Target:  5'- cAUGACCUUGCCAAUCUggcGCUGGUCUUu -3'
miRNA:   3'- -UGCUGGAGCGGUUGGA---CGACCGGAAc -5'
26820 3' -58 NC_005809.1 + 42289 0.78 0.077907
Target:  5'- cACGugCUCGCCGACCauccgggugUGCUuGGCCUg- -3'
miRNA:   3'- -UGCugGAGCGGUUGG---------ACGA-CCGGAac -5'
26820 3' -58 NC_005809.1 + 8695 0.74 0.138005
Target:  5'- gGCGACCUCGCC-ACCgcaGC-GGCCg-- -3'
miRNA:   3'- -UGCUGGAGCGGuUGGa--CGaCCGGaac -5'
26820 3' -58 NC_005809.1 + 4323 0.74 0.150077
Target:  5'- uUGACCUCcacgaugguGCCAGCCuugaUGCUGGCCg-- -3'
miRNA:   3'- uGCUGGAG---------CGGUUGG----ACGACCGGaac -5'
26820 3' -58 NC_005809.1 + 18261 0.73 0.15865
Target:  5'- cACGACCUgCGCCGagaACUUGCcGGCCg-- -3'
miRNA:   3'- -UGCUGGA-GCGGU---UGGACGaCCGGaac -5'
26820 3' -58 NC_005809.1 + 35068 0.72 0.197505
Target:  5'- aACGccauCCUCGgCAACCUGCUGGgCg-- -3'
miRNA:   3'- -UGCu---GGAGCgGUUGGACGACCgGaac -5'
26820 3' -58 NC_005809.1 + 24448 0.72 0.205105
Target:  5'- cGCGGCCUCGgCGacauugacgccgacgACCUGCugcuUGGCCUg- -3'
miRNA:   3'- -UGCUGGAGCgGU---------------UGGACG----ACCGGAac -5'
26820 3' -58 NC_005809.1 + 8541 0.72 0.208439
Target:  5'- cCGACCagaUCGCCAAUCUGCUGGa---- -3'
miRNA:   3'- uGCUGG---AGCGGUUGGACGACCggaac -5'
26820 3' -58 NC_005809.1 + 37576 0.72 0.208439
Target:  5'- -gGACUgCGCCGACCUGCUGuucGCCa-- -3'
miRNA:   3'- ugCUGGaGCGGUUGGACGAC---CGGaac -5'
26820 3' -58 NC_005809.1 + 23910 0.71 0.219892
Target:  5'- -gGGuuUCGCCuGCCUGCUGGUCa-- -3'
miRNA:   3'- ugCUggAGCGGuUGGACGACCGGaac -5'
26820 3' -58 NC_005809.1 + 4382 0.71 0.219892
Target:  5'- gGCGACg--GCCGACUUGUcGGCCUUGa -3'
miRNA:   3'- -UGCUGgagCGGUUGGACGaCCGGAAC- -5'
26820 3' -58 NC_005809.1 + 10917 0.71 0.225817
Target:  5'- gGCGACCUgccCGCCggUUUGCagGGCCUc- -3'
miRNA:   3'- -UGCUGGA---GCGGuuGGACGa-CCGGAac -5'
26820 3' -58 NC_005809.1 + 35138 0.71 0.238073
Target:  5'- -aGGCCgaaGCCGAaCUGCUGGCCg-- -3'
miRNA:   3'- ugCUGGag-CGGUUgGACGACCGGaac -5'
26820 3' -58 NC_005809.1 + 4704 0.71 0.238073
Target:  5'- cCGAUCUUGCCGAcCCUGCggcagcgcgGGCCa-- -3'
miRNA:   3'- uGCUGGAGCGGUU-GGACGa--------CCGGaac -5'
26820 3' -58 NC_005809.1 + 17197 0.71 0.238073
Target:  5'- aGCGGCCUCGCC-AUCUGCcgcaacuucgUGGUCa-- -3'
miRNA:   3'- -UGCUGGAGCGGuUGGACG----------ACCGGaac -5'
26820 3' -58 NC_005809.1 + 37754 0.71 0.241857
Target:  5'- gACGACggCGCCGGCCccgaccucuacaaGCUGGCCUa- -3'
miRNA:   3'- -UGCUGgaGCGGUUGGa------------CGACCGGAac -5'
26820 3' -58 NC_005809.1 + 28263 0.71 0.244407
Target:  5'- cCGACCUggacaaggCGCCGcACCUGCUGGgCgUGg -3'
miRNA:   3'- uGCUGGA--------GCGGU-UGGACGACCgGaAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.