miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26820 3' -58 NC_005809.1 + 480 0.7 0.285384
Target:  5'- uACGGCCgacgaucacCGCCGugCUGCUGGUg--- -3'
miRNA:   3'- -UGCUGGa--------GCGGUugGACGACCGgaac -5'
26820 3' -58 NC_005809.1 + 531 0.68 0.365337
Target:  5'- cCGACCgcgacagCGCCcGCaaGCUGGCCg-- -3'
miRNA:   3'- uGCUGGa------GCGGuUGgaCGACCGGaac -5'
26820 3' -58 NC_005809.1 + 731 0.69 0.307827
Target:  5'- gGCGGCUUUGCCGACaacGCcGGCCa-- -3'
miRNA:   3'- -UGCUGGAGCGGUUGga-CGaCCGGaac -5'
26820 3' -58 NC_005809.1 + 744 0.67 0.429849
Target:  5'- cCGGCCggCGCCGccguaggcGCCUGgUGGCUa-- -3'
miRNA:   3'- uGCUGGa-GCGGU--------UGGACgACCGGaac -5'
26820 3' -58 NC_005809.1 + 1396 0.69 0.323525
Target:  5'- cACGGCUUCcucgcgcuuGUCGGCCUGgUGGCCg-- -3'
miRNA:   3'- -UGCUGGAG---------CGGUUGGACgACCGGaac -5'
26820 3' -58 NC_005809.1 + 1779 0.66 0.469588
Target:  5'- gACGcCCUCGCCGGCaC-GCcGGCCc-- -3'
miRNA:   3'- -UGCuGGAGCGGUUG-GaCGaCCGGaac -5'
26820 3' -58 NC_005809.1 + 2080 0.78 0.067352
Target:  5'- cGCGACUUCGCCAGCgaGCgccugGGCCUc- -3'
miRNA:   3'- -UGCUGGAGCGGUUGgaCGa----CCGGAac -5'
26820 3' -58 NC_005809.1 + 2300 0.69 0.292719
Target:  5'- cGCGGCCacgCGCC-GCCUGCUGcGCgUg- -3'
miRNA:   3'- -UGCUGGa--GCGGuUGGACGAC-CGgAac -5'
26820 3' -58 NC_005809.1 + 2497 0.67 0.383076
Target:  5'- cCGAUCUUcgagGCCGGCCUGCUG-CCg-- -3'
miRNA:   3'- uGCUGGAG----CGGUUGGACGACcGGaac -5'
26820 3' -58 NC_005809.1 + 2662 1.07 0.000504
Target:  5'- uACGACCUCGCCAACCUGCUGGCCUUGc -3'
miRNA:   3'- -UGCUGGAGCGGUUGGACGACCGGAAC- -5'
26820 3' -58 NC_005809.1 + 2925 0.66 0.490149
Target:  5'- cAUGGCUcUGCCAACgCUacggcuuggcggGCUGGCCUUu -3'
miRNA:   3'- -UGCUGGaGCGGUUG-GA------------CGACCGGAAc -5'
26820 3' -58 NC_005809.1 + 4323 0.74 0.150077
Target:  5'- uUGACCUCcacgaugguGCCAGCCuugaUGCUGGCCg-- -3'
miRNA:   3'- uGCUGGAG---------CGGUUGG----ACGACCGGaac -5'
26820 3' -58 NC_005809.1 + 4382 0.71 0.219892
Target:  5'- gGCGACg--GCCGACUUGUcGGCCUUGa -3'
miRNA:   3'- -UGCUGgagCGGUUGGACGaCCGGAAC- -5'
26820 3' -58 NC_005809.1 + 4704 0.71 0.238073
Target:  5'- cCGAUCUUGCCGAcCCUGCggcagcgcgGGCCa-- -3'
miRNA:   3'- uGCUGGAGCGGUU-GGACGa--------CCGGaac -5'
26820 3' -58 NC_005809.1 + 5570 0.66 0.449477
Target:  5'- uCGACggCGCCAAC--GCUGGCCg-- -3'
miRNA:   3'- uGCUGgaGCGGUUGgaCGACCGGaac -5'
26820 3' -58 NC_005809.1 + 8541 0.72 0.208439
Target:  5'- cCGACCagaUCGCCAAUCUGCUGGa---- -3'
miRNA:   3'- uGCUGG---AGCGGUUGGACGACCggaac -5'
26820 3' -58 NC_005809.1 + 8695 0.74 0.138005
Target:  5'- gGCGACCUCGCC-ACCgcaGC-GGCCg-- -3'
miRNA:   3'- -UGCUGGAGCGGuUGGa--CGaCCGGaac -5'
26820 3' -58 NC_005809.1 + 8917 0.7 0.271152
Target:  5'- gGCGACCgagGCCAACgC-GCUGGCCc-- -3'
miRNA:   3'- -UGCUGGag-CGGUUG-GaCGACCGGaac -5'
26820 3' -58 NC_005809.1 + 10917 0.71 0.225817
Target:  5'- gGCGACCUgccCGCCggUUUGCagGGCCUc- -3'
miRNA:   3'- -UGCUGGA---GCGGuuGGACGa-CCGGAac -5'
26820 3' -58 NC_005809.1 + 11366 0.67 0.405104
Target:  5'- gGCGACCugcUCGCCcggcaccucgguggcGACCUGaugGGCCa-- -3'
miRNA:   3'- -UGCUGG---AGCGG---------------UUGGACga-CCGGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.