Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26820 | 3' | -58 | NC_005809.1 | + | 13034 | 0.66 | 0.43862 |
Target: 5'- gACGGCCUCGUCAucGCgUUGCUugagugcGGCCg-- -3' miRNA: 3'- -UGCUGGAGCGGU--UG-GACGA-------CCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 20313 | 0.7 | 0.285384 |
Target: 5'- gGCGGCCggUUGCgAugCggGCUGGCCUUc -3' miRNA: 3'- -UGCUGG--AGCGgUugGa-CGACCGGAAc -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 34337 | 0.7 | 0.285384 |
Target: 5'- aGCGACUUCGCCGACgaggGCacGGCCg-- -3' miRNA: 3'- -UGCUGGAGCGGUUGga--CGa-CCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 731 | 0.69 | 0.307827 |
Target: 5'- gGCGGCUUUGCCGACaacGCcGGCCa-- -3' miRNA: 3'- -UGCUGGAGCGGUUGga-CGaCCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 19995 | 0.68 | 0.356683 |
Target: 5'- cGCGuagaaCUCGCCAACUUGCUcGGCa--- -3' miRNA: 3'- -UGCug---GAGCGGUUGGACGA-CCGgaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 28877 | 0.67 | 0.392158 |
Target: 5'- cACGuCCUCGCUgcuGGCguagUUGCUGGCCg-- -3' miRNA: 3'- -UGCuGGAGCGG---UUG----GACGACCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 11366 | 0.67 | 0.405104 |
Target: 5'- gGCGACCugcUCGCCcggcaccucgguggcGACCUGaugGGCCa-- -3' miRNA: 3'- -UGCUGG---AGCGG---------------UUGGACga-CCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 24748 | 0.67 | 0.417365 |
Target: 5'- cGCGGCCUCGaCCcaugcugucggaauGACCUGCcacgGGUCg-- -3' miRNA: 3'- -UGCUGGAGC-GG--------------UUGGACGa---CCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 23003 | 0.67 | 0.420226 |
Target: 5'- --cGCCUgGUCGGCCUGCUGcugcGCCUg- -3' miRNA: 3'- ugcUGGAgCGGUUGGACGAC----CGGAac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 20217 | 0.7 | 0.285384 |
Target: 5'- aGCGcCCgcgGCCGG-CUGUUGGCCUUGg -3' miRNA: 3'- -UGCuGGag-CGGUUgGACGACCGGAAC- -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 21177 | 0.7 | 0.278195 |
Target: 5'- cGCGGCCUgcUGCgCGGCCugcUGCUGGUCUg- -3' miRNA: 3'- -UGCUGGA--GCG-GUUGG---ACGACCGGAac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 28673 | 0.7 | 0.250881 |
Target: 5'- gGCGGCCUCGCCAGCgCgGC-GcGCCa-- -3' miRNA: 3'- -UGCUGGAGCGGUUG-GaCGaC-CGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 18261 | 0.73 | 0.15865 |
Target: 5'- cACGACCUgCGCCGagaACUUGCcGGCCg-- -3' miRNA: 3'- -UGCUGGA-GCGGU---UGGACGaCCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 35068 | 0.72 | 0.197505 |
Target: 5'- aACGccauCCUCGgCAACCUGCUGGgCg-- -3' miRNA: 3'- -UGCu---GGAGCgGUUGGACGACCgGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 24448 | 0.72 | 0.205105 |
Target: 5'- cGCGGCCUCGgCGacauugacgccgacgACCUGCugcuUGGCCUg- -3' miRNA: 3'- -UGCUGGAGCgGU---------------UGGACG----ACCGGAac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 37576 | 0.72 | 0.208439 |
Target: 5'- -gGACUgCGCCGACCUGCUGuucGCCa-- -3' miRNA: 3'- ugCUGGaGCGGUUGGACGAC---CGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 4382 | 0.71 | 0.219892 |
Target: 5'- gGCGACg--GCCGACUUGUcGGCCUUGa -3' miRNA: 3'- -UGCUGgagCGGUUGGACGaCCGGAAC- -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 10917 | 0.71 | 0.225817 |
Target: 5'- gGCGACCUgccCGCCggUUUGCagGGCCUc- -3' miRNA: 3'- -UGCUGGA---GCGGuuGGACGa-CCGGAac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 35138 | 0.71 | 0.238073 |
Target: 5'- -aGGCCgaaGCCGAaCUGCUGGCCg-- -3' miRNA: 3'- ugCUGGag-CGGUUgGACGACCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 37754 | 0.71 | 0.241857 |
Target: 5'- gACGACggCGCCGGCCccgaccucuacaaGCUGGCCUa- -3' miRNA: 3'- -UGCUGgaGCGGUUGGa------------CGACCGGAac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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