Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26820 | 3' | -58 | NC_005809.1 | + | 2662 | 1.07 | 0.000504 |
Target: 5'- uACGACCUCGCCAACCUGCUGGCCUUGc -3' miRNA: 3'- -UGCUGGAGCGGUUGGACGACCGGAAC- -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 531 | 0.68 | 0.365337 |
Target: 5'- cCGACCgcgacagCGCCcGCaaGCUGGCCg-- -3' miRNA: 3'- uGCUGGa------GCGGuUGgaCGACCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 32989 | 0.67 | 0.383076 |
Target: 5'- cUGGCCgaacaGCCAGCCgUGCaGGCCgUGg -3' miRNA: 3'- uGCUGGag---CGGUUGG-ACGaCCGGaAC- -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 2925 | 0.66 | 0.490149 |
Target: 5'- cAUGGCUcUGCCAACgCUacggcuuggcggGCUGGCCUUu -3' miRNA: 3'- -UGCUGGaGCGGUUG-GA------------CGACCGGAAc -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 42289 | 0.78 | 0.077907 |
Target: 5'- cACGugCUCGCCGACCauccgggugUGCUuGGCCUg- -3' miRNA: 3'- -UGCugGAGCGGUUGG---------ACGA-CCGGAac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 8695 | 0.74 | 0.138005 |
Target: 5'- gGCGACCUCGCC-ACCgcaGC-GGCCg-- -3' miRNA: 3'- -UGCUGGAGCGGuUGGa--CGaCCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 23910 | 0.71 | 0.219892 |
Target: 5'- -gGGuuUCGCCuGCCUGCUGGUCa-- -3' miRNA: 3'- ugCUggAGCGGuUGGACGACCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 17197 | 0.71 | 0.238073 |
Target: 5'- aGCGGCCUCGCC-AUCUGCcgcaacuucgUGGUCa-- -3' miRNA: 3'- -UGCUGGAGCGGuUGGACG----------ACCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 8917 | 0.7 | 0.271152 |
Target: 5'- gGCGACCgagGCCAACgC-GCUGGCCc-- -3' miRNA: 3'- -UGCUGGag-CGGUUG-GaCGACCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 24623 | 0.68 | 0.339811 |
Target: 5'- cCGGCCUCGCCAucGCCgcGCUGcGCg--- -3' miRNA: 3'- uGCUGGAGCGGU--UGGa-CGAC-CGgaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 27662 | 0.7 | 0.285384 |
Target: 5'- gACGACCaCGCCAucuggcgccGCCUGCUG-CCg-- -3' miRNA: 3'- -UGCUGGaGCGGU---------UGGACGACcGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 28263 | 0.71 | 0.244407 |
Target: 5'- cCGACCUggacaaggCGCCGcACCUGCUGGgCgUGg -3' miRNA: 3'- uGCUGGA--------GCGGU-UGGACGACCgGaAC- -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 12086 | 0.82 | 0.034182 |
Target: 5'- -aGACCUCGCCGGCCacggccgcgcUGCUGGCCgacgUGg -3' miRNA: 3'- ugCUGGAGCGGUUGG----------ACGACCGGa---AC- -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 2300 | 0.69 | 0.292719 |
Target: 5'- cGCGGCCacgCGCC-GCCUGCUGcGCgUg- -3' miRNA: 3'- -UGCUGGa--GCGGuUGGACGAC-CGgAac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 2080 | 0.78 | 0.067352 |
Target: 5'- cGCGACUUCGCCAGCgaGCgccugGGCCUc- -3' miRNA: 3'- -UGCUGGAGCGGUUGgaCGa----CCGGAac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 4704 | 0.71 | 0.238073 |
Target: 5'- cCGAUCUUGCCGAcCCUGCggcagcgcgGGCCa-- -3' miRNA: 3'- uGCUGGAGCGGUU-GGACGa--------CCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 1396 | 0.69 | 0.323525 |
Target: 5'- cACGGCUUCcucgcgcuuGUCGGCCUGgUGGCCg-- -3' miRNA: 3'- -UGCUGGAG---------CGGUUGGACgACCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 34943 | 0.68 | 0.374136 |
Target: 5'- uUGACCUCGgCGGCCgGCUuGCCg-- -3' miRNA: 3'- uGCUGGAGCgGUUGGaCGAcCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 37899 | 0.78 | 0.071398 |
Target: 5'- cAUGACCUUGCCAAUCUggcGCUGGUCUUu -3' miRNA: 3'- -UGCUGGAGCGGUUGGA---CGACCGGAAc -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 8541 | 0.72 | 0.208439 |
Target: 5'- cCGACCagaUCGCCAAUCUGCUGGa---- -3' miRNA: 3'- uGCUGG---AGCGGUUGGACGACCggaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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