Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26820 | 3' | -58 | NC_005809.1 | + | 42289 | 0.78 | 0.077907 |
Target: 5'- cACGugCUCGCCGACCauccgggugUGCUuGGCCUg- -3' miRNA: 3'- -UGCugGAGCGGUUGG---------ACGA-CCGGAac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 38482 | 0.66 | 0.4396 |
Target: 5'- aGCGccgcccACCUgGCCGGCCUGaUGGCUa-- -3' miRNA: 3'- -UGC------UGGAgCGGUUGGACgACCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 37899 | 0.78 | 0.071398 |
Target: 5'- cAUGACCUUGCCAAUCUggcGCUGGUCUUu -3' miRNA: 3'- -UGCUGGAGCGGUUGGA---CGACCGGAAc -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 37754 | 0.71 | 0.241857 |
Target: 5'- gACGACggCGCCGGCCccgaccucuacaaGCUGGCCUa- -3' miRNA: 3'- -UGCUGgaGCGGUUGGa------------CGACCGGAac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 37576 | 0.72 | 0.208439 |
Target: 5'- -gGACUgCGCCGACCUGCUGuucGCCa-- -3' miRNA: 3'- ugCUGGaGCGGUUGGACGAC---CGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 37314 | 0.66 | 0.449477 |
Target: 5'- aACGACgcaUUGCCGaccccgACCUGCcGGCCg-- -3' miRNA: 3'- -UGCUGg--AGCGGU------UGGACGaCCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 36961 | 0.67 | 0.401378 |
Target: 5'- cAUGAUuagcugCUUGCCGGCCuUGUccuUGGCCUUGu -3' miRNA: 3'- -UGCUG------GAGCGGUUGG-ACG---ACCGGAAC- -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 35894 | 0.67 | 0.414516 |
Target: 5'- uCGGCCUuggCGCCccacuuuuccuuggcGACCUGCucgaUGGCCUg- -3' miRNA: 3'- uGCUGGA---GCGG---------------UUGGACG----ACCGGAac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 35138 | 0.71 | 0.238073 |
Target: 5'- -aGGCCgaaGCCGAaCUGCUGGCCg-- -3' miRNA: 3'- ugCUGGag-CGGUUgGACGACCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 35068 | 0.72 | 0.197505 |
Target: 5'- aACGccauCCUCGgCAACCUGCUGGgCg-- -3' miRNA: 3'- -UGCu---GGAGCgGUUGGACGACCgGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 34943 | 0.68 | 0.374136 |
Target: 5'- uUGACCUCGgCGGCCgGCUuGCCg-- -3' miRNA: 3'- uGCUGGAGCgGUUGGaCGAcCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 34610 | 0.66 | 0.469588 |
Target: 5'- gACGAacucauCgUUGCCGACCUGaaauaUGGCCgUGg -3' miRNA: 3'- -UGCU------GgAGCGGUUGGACg----ACCGGaAC- -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 34337 | 0.7 | 0.285384 |
Target: 5'- aGCGACUUCGCCGACgaggGCacGGCCg-- -3' miRNA: 3'- -UGCUGGAGCGGUUGga--CGa-CCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 32989 | 0.67 | 0.383076 |
Target: 5'- cUGGCCgaacaGCCAGCCgUGCaGGCCgUGg -3' miRNA: 3'- uGCUGGag---CGGUUGG-ACGaCCGGaAC- -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 28877 | 0.67 | 0.392158 |
Target: 5'- cACGuCCUCGCUgcuGGCguagUUGCUGGCCg-- -3' miRNA: 3'- -UGCuGGAGCGG---UUG----GACGACCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 28673 | 0.7 | 0.250881 |
Target: 5'- gGCGGCCUCGCCAGCgCgGC-GcGCCa-- -3' miRNA: 3'- -UGCUGGAGCGGUUG-GaCGaC-CGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 28547 | 0.66 | 0.469588 |
Target: 5'- cACGACCUUG-CGGCC-GCcGGCCa-- -3' miRNA: 3'- -UGCUGGAGCgGUUGGaCGaCCGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 28263 | 0.71 | 0.244407 |
Target: 5'- cCGACCUggacaaggCGCCGcACCUGCUGGgCgUGg -3' miRNA: 3'- uGCUGGA--------GCGGU-UGGACGACCgGaAC- -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 27662 | 0.7 | 0.285384 |
Target: 5'- gACGACCaCGCCAucuggcgccGCCUGCUG-CCg-- -3' miRNA: 3'- -UGCUGGaGCGGU---------UGGACGACcGGaac -5' |
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26820 | 3' | -58 | NC_005809.1 | + | 24748 | 0.67 | 0.417365 |
Target: 5'- cGCGGCCUCGaCCcaugcugucggaauGACCUGCcacgGGUCg-- -3' miRNA: 3'- -UGCUGGAGC-GG--------------UUGGACGa---CCGGaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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