miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26820 5' -51.6 NC_005809.1 + 30413 0.7 0.594413
Target:  5'- gCUUuc-GCuCGGCAuggcgAUGAGCGCGGg -3'
miRNA:   3'- -GAGuuuCG-GCCGUuaa--UGCUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 19244 0.7 0.617283
Target:  5'- aUCGAcGCCGGCGGc-ACGGGCaGCGa -3'
miRNA:   3'- gAGUUuCGGCCGUUaaUGCUCG-CGCc -5'
26820 5' -51.6 NC_005809.1 + 5272 0.7 0.628744
Target:  5'- cCUCGAcgugggcacgguAGCCGGCAAUaucgACGAcGUGCaGGc -3'
miRNA:   3'- -GAGUU------------UCGGCCGUUAa---UGCU-CGCG-CC- -5'
26820 5' -51.6 NC_005809.1 + 10937 0.7 0.628744
Target:  5'- -gCAGGGCCucgGGCAGUUGCGcGGCGacagcCGGg -3'
miRNA:   3'- gaGUUUCGG---CCGUUAAUGC-UCGC-----GCC- -5'
26820 5' -51.6 NC_005809.1 + 27549 0.7 0.637916
Target:  5'- -----cGCCGGCAuccucgcguggUGCGuGCGCGGc -3'
miRNA:   3'- gaguuuCGGCCGUua---------AUGCuCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 9846 0.7 0.640209
Target:  5'- cCUCGGuuUCGGCGucgAUGAGCGUGGc -3'
miRNA:   3'- -GAGUUucGGCCGUuaaUGCUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 7082 0.69 0.64823
Target:  5'- aUCAAcGCCaaguccucguucauGGCGAau-CGGGCGCGGa -3'
miRNA:   3'- gAGUUuCGG--------------CCGUUaauGCUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 24800 0.69 0.651665
Target:  5'- gUCGAGGCCGcGCA------GGCGCGGu -3'
miRNA:   3'- gAGUUUCGGC-CGUuaaugcUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 33540 0.69 0.663102
Target:  5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3'
miRNA:   3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5'
26820 5' -51.6 NC_005809.1 + 33636 0.69 0.663102
Target:  5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3'
miRNA:   3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5'
26820 5' -51.6 NC_005809.1 + 33612 0.69 0.663102
Target:  5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3'
miRNA:   3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5'
26820 5' -51.6 NC_005809.1 + 33252 0.69 0.663102
Target:  5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3'
miRNA:   3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5'
26820 5' -51.6 NC_005809.1 + 33396 0.69 0.663102
Target:  5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3'
miRNA:   3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5'
26820 5' -51.6 NC_005809.1 + 33492 0.69 0.663102
Target:  5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3'
miRNA:   3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5'
26820 5' -51.6 NC_005809.1 + 40881 0.69 0.663102
Target:  5'- gUCAuGGCCGGCc--UGCGccuGGCGCGu -3'
miRNA:   3'- gAGUuUCGGCCGuuaAUGC---UCGCGCc -5'
26820 5' -51.6 NC_005809.1 + 33516 0.69 0.663102
Target:  5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3'
miRNA:   3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5'
26820 5' -51.6 NC_005809.1 + 42397 0.69 0.674508
Target:  5'- -gUAGGGCCGGCGGUaGCGAauccccagGCGCu- -3'
miRNA:   3'- gaGUUUCGGCCGUUAaUGCU--------CGCGcc -5'
26820 5' -51.6 NC_005809.1 + 38181 0.69 0.68587
Target:  5'- gCUCAAGGcCCGGCGcg-ACG-GCGCc- -3'
miRNA:   3'- -GAGUUUC-GGCCGUuaaUGCuCGCGcc -5'
26820 5' -51.6 NC_005809.1 + 34188 0.69 0.68587
Target:  5'- -aCGuGGgCGGCGAUUcucgaagauuCGAGCGCGGc -3'
miRNA:   3'- gaGUuUCgGCCGUUAAu---------GCUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 36556 0.69 0.697177
Target:  5'- cCUCGAAGUCGu------CGAGCGCGGc -3'
miRNA:   3'- -GAGUUUCGGCcguuaauGCUCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.