Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 2627 | 1.11 | 0.001337 |
Target: 5'- aCUCAAAGCCGGCAAUUACGAGCGCGGc -3' miRNA: 3'- -GAGUUUCGGCCGUUAAUGCUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 23566 | 0.83 | 0.105803 |
Target: 5'- -aCAucGCCGGCAggUGCGGGCGgGGg -3' miRNA: 3'- gaGUuuCGGCCGUuaAUGCUCGCgCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 31099 | 0.82 | 0.129852 |
Target: 5'- cCUCGgugcAGGCCGGCGAguggUGCGAGauaGCGGg -3' miRNA: 3'- -GAGU----UUCGGCCGUUa---AUGCUCg--CGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 17288 | 0.81 | 0.163457 |
Target: 5'- -aCGAAGCCGGCGcc-GCGGGCGCGc -3' miRNA: 3'- gaGUUUCGGCCGUuaaUGCUCGCGCc -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 38604 | 0.79 | 0.204683 |
Target: 5'- uUCAAAGCCGGCcgcgGCGAGCGgcaGGc -3' miRNA: 3'- gAGUUUCGGCCGuuaaUGCUCGCg--CC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 32593 | 0.78 | 0.24389 |
Target: 5'- aUCcuGGCCGGCAucaccagccugcACGGGCGCGGa -3' miRNA: 3'- gAGuuUCGGCCGUuaa---------UGCUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 20834 | 0.75 | 0.347625 |
Target: 5'- ----cAGCCGcGCGAUgaguCGAGCGCGGc -3' miRNA: 3'- gaguuUCGGC-CGUUAau--GCUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 26041 | 0.75 | 0.356387 |
Target: 5'- aUCAAAGCCcGCGcg-GCGGGCGCGc -3' miRNA: 3'- gAGUUUCGGcCGUuaaUGCUCGCGCc -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 18649 | 0.75 | 0.374371 |
Target: 5'- uCUCGGacGGCCaGGCcGUcaccGCGAGCGCGGc -3' miRNA: 3'- -GAGUU--UCGG-CCGuUAa---UGCUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 23500 | 0.72 | 0.483552 |
Target: 5'- uCUCGAccuG-CGGCAGUUccGCGAGCGCGc -3' miRNA: 3'- -GAGUUu--CgGCCGUUAA--UGCUCGCGCc -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 13251 | 0.72 | 0.515938 |
Target: 5'- -aCAAcGCCGGcCAAggGCGcccAGCGCGGc -3' miRNA: 3'- gaGUUuCGGCC-GUUaaUGC---UCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 40388 | 0.71 | 0.538007 |
Target: 5'- -cCuuGGCCGGCAGUU-CGAcGCGCa- -3' miRNA: 3'- gaGuuUCGGCCGUUAAuGCU-CGCGcc -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 37063 | 0.71 | 0.548045 |
Target: 5'- gUCGAGGCCGGCAuacuccacgaAUUugGcccacucGGCGgGGu -3' miRNA: 3'- gAGUUUCGGCCGU----------UAAugC-------UCGCgCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 27501 | 0.71 | 0.549164 |
Target: 5'- -cCAGGGCCuGCGGccgcCGGGCGCGGu -3' miRNA: 3'- gaGUUUCGGcCGUUaau-GCUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 28664 | 0.71 | 0.549164 |
Target: 5'- aUCGGuGCCGGCGGccuCGccAGCGCGGc -3' miRNA: 3'- gAGUUuCGGCCGUUaauGC--UCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 14189 | 0.71 | 0.549164 |
Target: 5'- -gCGAAGCCGGUguccuugucauaGGUcagGCGcAGCGCGGc -3' miRNA: 3'- gaGUUUCGGCCG------------UUAa--UGC-UCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 16496 | 0.71 | 0.571681 |
Target: 5'- uUCAAcgccGCCGGCGAUUACcc-CGCGGc -3' miRNA: 3'- gAGUUu---CGGCCGUUAAUGcucGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 8065 | 0.71 | 0.583025 |
Target: 5'- uUCGu-GCguuCGGCAA--ACGAGCGCGGc -3' miRNA: 3'- gAGUuuCG---GCCGUUaaUGCUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 1706 | 0.71 | 0.583025 |
Target: 5'- uUCGccguGGGCCGGCGugccgGCGAGgGCGu -3' miRNA: 3'- gAGU----UUCGGCCGUuaa--UGCUCgCGCc -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 23983 | 0.71 | 0.583025 |
Target: 5'- aUCAcgccuauGCCGGCAuggaagccGCGGGCGUGGc -3' miRNA: 3'- gAGUuu-----CGGCCGUuaa-----UGCUCGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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