Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 330 | 0.66 | 0.833266 |
Target: 5'- gUC-AGGCUGGCGGUgGCGucGCGCa- -3' miRNA: 3'- gAGuUUCGGCCGUUAaUGCu-CGCGcc -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 882 | 0.67 | 0.773687 |
Target: 5'- -cCGAcGuUCGGCAAggGCuGGGCGCGGc -3' miRNA: 3'- gaGUUuC-GGCCGUUaaUG-CUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 1706 | 0.71 | 0.583025 |
Target: 5'- uUCGccguGGGCCGGCGugccgGCGAGgGCGu -3' miRNA: 3'- gAGU----UUCGGCCGUuaa--UGCUCgCGCc -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 2627 | 1.11 | 0.001337 |
Target: 5'- aCUCAAAGCCGGCAAUUACGAGCGCGGc -3' miRNA: 3'- -GAGUUUCGGCCGUUAAUGCUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 3490 | 0.67 | 0.784085 |
Target: 5'- uUCGAcGGcCCGGCGuuccagUACGcAGCGCGa -3' miRNA: 3'- gAGUU-UC-GGCCGUua----AUGC-UCGCGCc -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 4032 | 0.66 | 0.823844 |
Target: 5'- gUCAu-GCCGcGCGGgu-CGAGCGCa- -3' miRNA: 3'- gAGUuuCGGC-CGUUaauGCUCGCGcc -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 4857 | 0.67 | 0.794312 |
Target: 5'- -gCAGcgccAGCCGGCGugcuggGCGcAGUGUGGg -3' miRNA: 3'- gaGUU----UCGGCCGUuaa---UGC-UCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 5272 | 0.7 | 0.628744 |
Target: 5'- cCUCGAcgugggcacgguAGCCGGCAAUaucgACGAcGUGCaGGc -3' miRNA: 3'- -GAGUU------------UCGGCCGUUAa---UGCU-CGCG-CC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 6625 | 0.66 | 0.860113 |
Target: 5'- cCUCAAGGaugcgcugacgcCUGGCGAUU-CGGGCGaCGa -3' miRNA: 3'- -GAGUUUC------------GGCCGUUAAuGCUCGC-GCc -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 7082 | 0.69 | 0.64823 |
Target: 5'- aUCAAcGCCaaguccucguucauGGCGAau-CGGGCGCGGa -3' miRNA: 3'- gAGUUuCGG--------------CCGUUaauGCUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 7705 | 0.68 | 0.719572 |
Target: 5'- --aGGAGCCGGCGuggguCGAGcCGCGc -3' miRNA: 3'- gagUUUCGGCCGUuaau-GCUC-GCGCc -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 8065 | 0.71 | 0.583025 |
Target: 5'- uUCGu-GCguuCGGCAA--ACGAGCGCGGc -3' miRNA: 3'- gAGUuuCG---GCCGUUaaUGCUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 8124 | 0.68 | 0.76313 |
Target: 5'- -gCGcGGCCGGCGuugGUUGUGGGCguGCGGg -3' miRNA: 3'- gaGUuUCGGCCGU---UAAUGCUCG--CGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 9726 | 0.67 | 0.813228 |
Target: 5'- cCUCGAAGCCgcgGGCGAacUGCucgugguGGGCGCGc -3' miRNA: 3'- -GAGUUUCGG---CCGUUa-AUG-------CUCGCGCc -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 9846 | 0.7 | 0.640209 |
Target: 5'- cCUCGGuuUCGGCGucgAUGAGCGUGGc -3' miRNA: 3'- -GAGUUucGGCCGUuaaUGCUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 10937 | 0.7 | 0.628744 |
Target: 5'- -gCAGGGCCucgGGCAGUUGCGcGGCGacagcCGGg -3' miRNA: 3'- gaGUUUCGG---CCGUUAAUGC-UCGC-----GCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 12993 | 0.67 | 0.784085 |
Target: 5'- --aGAAGCUGacuaGC-GUUAUGGGCGCGGc -3' miRNA: 3'- gagUUUCGGC----CGuUAAUGCUCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 13251 | 0.72 | 0.515938 |
Target: 5'- -aCAAcGCCGGcCAAggGCGcccAGCGCGGc -3' miRNA: 3'- gaGUUuCGGCC-GUUaaUGC---UCGCGCC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 13308 | 0.66 | 0.85141 |
Target: 5'- -cCGGGGCCGGCGuuguagGCG-GCGUaGGc -3' miRNA: 3'- gaGUUUCGGCCGUuaa---UGCuCGCG-CC- -5' |
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26820 | 5' | -51.6 | NC_005809.1 | + | 13601 | 0.69 | 0.697177 |
Target: 5'- gUCAGgcGGCCGaCAGUU-CG-GCGCGGa -3' miRNA: 3'- gAGUU--UCGGCcGUUAAuGCuCGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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