miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26820 5' -51.6 NC_005809.1 + 21808 0.68 0.752426
Target:  5'- -gCGGAcaCCGGCAGUUGC-AGCgGCGGg -3'
miRNA:   3'- gaGUUUc-GGCCGUUAAUGcUCG-CGCC- -5'
26820 5' -51.6 NC_005809.1 + 33396 0.69 0.663102
Target:  5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3'
miRNA:   3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5'
26820 5' -51.6 NC_005809.1 + 33492 0.69 0.663102
Target:  5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3'
miRNA:   3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5'
26820 5' -51.6 NC_005809.1 + 33516 0.69 0.663102
Target:  5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3'
miRNA:   3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5'
26820 5' -51.6 NC_005809.1 + 33540 0.69 0.663102
Target:  5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3'
miRNA:   3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5'
26820 5' -51.6 NC_005809.1 + 33612 0.69 0.663102
Target:  5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3'
miRNA:   3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5'
26820 5' -51.6 NC_005809.1 + 33636 0.69 0.663102
Target:  5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3'
miRNA:   3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5'
26820 5' -51.6 NC_005809.1 + 38181 0.69 0.68587
Target:  5'- gCUCAAGGcCCGGCGcg-ACG-GCGCc- -3'
miRNA:   3'- -GAGUUUC-GGCCGUuaaUGCuCGCGcc -5'
26820 5' -51.6 NC_005809.1 + 34188 0.69 0.68587
Target:  5'- -aCGuGGgCGGCGAUUcucgaagauuCGAGCGCGGc -3'
miRNA:   3'- gaGUuUCgGCCGUUAAu---------GCUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 33252 0.69 0.663102
Target:  5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3'
miRNA:   3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5'
26820 5' -51.6 NC_005809.1 + 9846 0.7 0.640209
Target:  5'- cCUCGGuuUCGGCGucgAUGAGCGUGGc -3'
miRNA:   3'- -GAGUUucGGCCGUuaaUGCUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 10937 0.7 0.628744
Target:  5'- -gCAGGGCCucgGGCAGUUGCGcGGCGacagcCGGg -3'
miRNA:   3'- gaGUUUCGG---CCGUUAAUGC-UCGC-----GCC- -5'
26820 5' -51.6 NC_005809.1 + 31099 0.82 0.129852
Target:  5'- cCUCGgugcAGGCCGGCGAguggUGCGAGauaGCGGg -3'
miRNA:   3'- -GAGU----UUCGGCCGUUa---AUGCUCg--CGCC- -5'
26820 5' -51.6 NC_005809.1 + 17288 0.81 0.163457
Target:  5'- -aCGAAGCCGGCGcc-GCGGGCGCGc -3'
miRNA:   3'- gaGUUUCGGCCGUuaaUGCUCGCGCc -5'
26820 5' -51.6 NC_005809.1 + 26041 0.75 0.356387
Target:  5'- aUCAAAGCCcGCGcg-GCGGGCGCGc -3'
miRNA:   3'- gAGUUUCGGcCGUuaaUGCUCGCGCc -5'
26820 5' -51.6 NC_005809.1 + 23500 0.72 0.483552
Target:  5'- uCUCGAccuG-CGGCAGUUccGCGAGCGCGc -3'
miRNA:   3'- -GAGUUu--CgGCCGUUAA--UGCUCGCGCc -5'
26820 5' -51.6 NC_005809.1 + 14189 0.71 0.549164
Target:  5'- -gCGAAGCCGGUguccuugucauaGGUcagGCGcAGCGCGGc -3'
miRNA:   3'- gaGUUUCGGCCG------------UUAa--UGC-UCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 28664 0.71 0.549164
Target:  5'- aUCGGuGCCGGCGGccuCGccAGCGCGGc -3'
miRNA:   3'- gAGUUuCGGCCGUUaauGC--UCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 1706 0.71 0.583025
Target:  5'- uUCGccguGGGCCGGCGugccgGCGAGgGCGu -3'
miRNA:   3'- gAGU----UUCGGCCGUuaa--UGCUCgCGCc -5'
26820 5' -51.6 NC_005809.1 + 30413 0.7 0.594413
Target:  5'- gCUUuc-GCuCGGCAuggcgAUGAGCGCGGg -3'
miRNA:   3'- -GAGuuuCG-GCCGUuaa--UGCUCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.