miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26820 5' -51.6 NC_005809.1 + 2627 1.11 0.001337
Target:  5'- aCUCAAAGCCGGCAAUUACGAGCGCGGc -3'
miRNA:   3'- -GAGUUUCGGCCGUUAAUGCUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 40881 0.69 0.663102
Target:  5'- gUCAuGGCCGGCc--UGCGccuGGCGCGu -3'
miRNA:   3'- gAGUuUCGGCCGuuaAUGC---UCGCGCc -5'
26820 5' -51.6 NC_005809.1 + 36556 0.69 0.697177
Target:  5'- cCUCGAAGUCGu------CGAGCGCGGc -3'
miRNA:   3'- -GAGUUUCGGCcguuaauGCUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 6625 0.66 0.860113
Target:  5'- cCUCAAGGaugcgcugacgcCUGGCGAUU-CGGGCGaCGa -3'
miRNA:   3'- -GAGUUUC------------GGCCGUUAAuGCUCGC-GCc -5'
26820 5' -51.6 NC_005809.1 + 18649 0.75 0.374371
Target:  5'- uCUCGGacGGCCaGGCcGUcaccGCGAGCGCGGc -3'
miRNA:   3'- -GAGUU--UCGG-CCGuUAa---UGCUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 13251 0.72 0.515938
Target:  5'- -aCAAcGCCGGcCAAggGCGcccAGCGCGGc -3'
miRNA:   3'- gaGUUuCGGCC-GUUaaUGC---UCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 37063 0.71 0.548045
Target:  5'- gUCGAGGCCGGCAuacuccacgaAUUugGcccacucGGCGgGGu -3'
miRNA:   3'- gAGUUUCGGCCGU----------UAAugC-------UCGCgCC- -5'
26820 5' -51.6 NC_005809.1 + 27501 0.71 0.549164
Target:  5'- -cCAGGGCCuGCGGccgcCGGGCGCGGu -3'
miRNA:   3'- gaGUUUCGGcCGUUaau-GCUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 8065 0.71 0.583025
Target:  5'- uUCGu-GCguuCGGCAA--ACGAGCGCGGc -3'
miRNA:   3'- gAGUuuCG---GCCGUUaaUGCUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 24800 0.69 0.651665
Target:  5'- gUCGAGGCCGcGCA------GGCGCGGu -3'
miRNA:   3'- gAGUUUCGGC-CGUuaaugcUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 5272 0.7 0.628744
Target:  5'- cCUCGAcgugggcacgguAGCCGGCAAUaucgACGAcGUGCaGGc -3'
miRNA:   3'- -GAGUU------------UCGGCCGUUAa---UGCU-CGCG-CC- -5'
26820 5' -51.6 NC_005809.1 + 23983 0.71 0.583025
Target:  5'- aUCAcgccuauGCCGGCAuggaagccGCGGGCGUGGc -3'
miRNA:   3'- gAGUuu-----CGGCCGUuaa-----UGCUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 38604 0.79 0.204683
Target:  5'- uUCAAAGCCGGCcgcgGCGAGCGgcaGGc -3'
miRNA:   3'- gAGUUUCGGCCGuuaaUGCUCGCg--CC- -5'
26820 5' -51.6 NC_005809.1 + 27549 0.7 0.637916
Target:  5'- -----cGCCGGCAuccucgcguggUGCGuGCGCGGc -3'
miRNA:   3'- gaguuuCGGCCGUua---------AUGCuCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 32593 0.78 0.24389
Target:  5'- aUCcuGGCCGGCAucaccagccugcACGGGCGCGGa -3'
miRNA:   3'- gAGuuUCGGCCGUuaa---------UGCUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 16496 0.71 0.571681
Target:  5'- uUCAAcgccGCCGGCGAUUACcc-CGCGGc -3'
miRNA:   3'- gAGUUu---CGGCCGUUAAUGcucGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 7082 0.69 0.64823
Target:  5'- aUCAAcGCCaaguccucguucauGGCGAau-CGGGCGCGGa -3'
miRNA:   3'- gAGUUuCGG--------------CCGUUaauGCUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 42397 0.69 0.674508
Target:  5'- -gUAGGGCCGGCGGUaGCGAauccccagGCGCu- -3'
miRNA:   3'- gaGUUUCGGCCGUUAaUGCU--------CGCGcc -5'
26820 5' -51.6 NC_005809.1 + 20834 0.75 0.347625
Target:  5'- ----cAGCCGcGCGAUgaguCGAGCGCGGc -3'
miRNA:   3'- gaguuUCGGC-CGUUAau--GCUCGCGCC- -5'
26820 5' -51.6 NC_005809.1 + 40388 0.71 0.538007
Target:  5'- -cCuuGGCCGGCAGUU-CGAcGCGCa- -3'
miRNA:   3'- gaGuuUCGGCCGUUAAuGCU-CGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.