Results 1 - 20 of 82 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 42397 | 0.69 | 0.674508 |
Target: 5'- -gUAGGGCCGGCGGUaGCGAauccccagGCGCu- -3' miRNA: 3'- gaGUUUCGGCCGUUAaUGCU--------CGCGcc -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 41656 | 0.67 | 0.814204 |
Target: 5'- -cCAAGGCaGGC---UACGAaaGCGCGGu -3' miRNA: 3'- gaGUUUCGgCCGuuaAUGCU--CGCGCC- -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 40881 | 0.69 | 0.663102 |
Target: 5'- gUCAuGGCCGGCc--UGCGccuGGCGCGu -3' miRNA: 3'- gAGUuUCGGCCGuuaAUGC---UCGCGCc -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 40388 | 0.71 | 0.538007 |
Target: 5'- -cCuuGGCCGGCAGUU-CGAcGCGCa- -3' miRNA: 3'- gaGuuUCGGCCGUUAAuGCU-CGCGcc -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 40341 | 0.67 | 0.784085 |
Target: 5'- -cCAAGGcCCGGCGuUUAUaccgcgacaugGAGCGCGa -3' miRNA: 3'- gaGUUUC-GGCCGUuAAUG-----------CUCGCGCc -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 39920 | 0.66 | 0.85141 |
Target: 5'- -aCAcguuGGCCGGacgcu-UGAGCGCGGc -3' miRNA: 3'- gaGUu---UCGGCCguuaauGCUCGCGCC- -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 38604 | 0.79 | 0.204683 |
Target: 5'- uUCAAAGCCGGCcgcgGCGAGCGgcaGGc -3' miRNA: 3'- gAGUUUCGGCCGuuaaUGCUCGCg--CC- -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 38452 | 0.66 | 0.860113 |
Target: 5'- cCUCGAuGGCgGGCAuGUUggccGCGAGCacgucGCGGc -3' miRNA: 3'- -GAGUU-UCGgCCGU-UAA----UGCUCG-----CGCC- -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 38323 | 0.66 | 0.832334 |
Target: 5'- -aCAGcuuGCCGGCGucauccaGUUGCGGGCuGgGGu -3' miRNA: 3'- gaGUUu--CGGCCGU-------UAAUGCUCG-CgCC- -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 38181 | 0.69 | 0.68587 |
Target: 5'- gCUCAAGGcCCGGCGcg-ACG-GCGCc- -3' miRNA: 3'- -GAGUUUC-GGCCGUuaaUGCuCGCGcc -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 37327 | 0.67 | 0.784085 |
Target: 5'- gUCGAGGCCGuaGGccGCGAGCacGUGGc -3' miRNA: 3'- gAGUUUCGGCcgUUaaUGCUCG--CGCC- -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 37063 | 0.71 | 0.548045 |
Target: 5'- gUCGAGGCCGGCAuacuccacgaAUUugGcccacucGGCGgGGu -3' miRNA: 3'- gAGUUUCGGCCGU----------UAAugC-------UCGCgCC- -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 36556 | 0.69 | 0.697177 |
Target: 5'- cCUCGAAGUCGu------CGAGCGCGGc -3' miRNA: 3'- -GAGUUUCGGCcguuaauGCUCGCGCC- -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 35321 | 0.67 | 0.794312 |
Target: 5'- -aCAAGGCCGGCGAcauCGGcccGCGCc- -3' miRNA: 3'- gaGUUUCGGCCGUUaauGCU---CGCGcc -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 34842 | 0.66 | 0.860113 |
Target: 5'- -aCAgcAAGCCGGCcgc--CGAGCGUGc -3' miRNA: 3'- gaGU--UUCGGCCGuuaauGCUCGCGCc -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 34188 | 0.69 | 0.68587 |
Target: 5'- -aCGuGGgCGGCGAUUcucgaagauuCGAGCGCGGc -3' miRNA: 3'- gaGUuUCgGCCGUUAAu---------GCUCGCGCC- -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 34092 | 0.67 | 0.814204 |
Target: 5'- gCUCGAcAGCCGcGcCGAUgGCGGGCaGCGa -3' miRNA: 3'- -GAGUU-UCGGC-C-GUUAaUGCUCG-CGCc -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 33636 | 0.69 | 0.663102 |
Target: 5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3' miRNA: 3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 33612 | 0.69 | 0.663102 |
Target: 5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3' miRNA: 3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5' |
|||||||
26820 | 5' | -51.6 | NC_005809.1 | + | 33540 | 0.69 | 0.663102 |
Target: 5'- -cCAccGCUGGCAAUUACG-GCaCGGc -3' miRNA: 3'- gaGUuuCGGCCGUUAAUGCuCGcGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home