miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 8846 0.72 0.212607
Target:  5'- --aACGCgGGCCAGCGCguUGGCcucGGUCGCc -3'
miRNA:   3'- uuaUGUG-CCGGUUGUG--ACCG---CCGGCG- -5'
26822 3' -57 NC_005809.1 + 8885 0.69 0.355784
Target:  5'- --gGCGCGGgCAucauugugaaugGCGCUaucGGCGGCgCGCu -3'
miRNA:   3'- uuaUGUGCCgGU------------UGUGA---CCGCCG-GCG- -5'
26822 3' -57 NC_005809.1 + 9107 0.66 0.500718
Target:  5'- cGUGC-CGgauucGCCAGCGgUGGCcGuGCCGCg -3'
miRNA:   3'- uUAUGuGC-----CGGUUGUgACCG-C-CGGCG- -5'
26822 3' -57 NC_005809.1 + 9251 0.66 0.500718
Target:  5'- cGUGC-CGgauucGCCAGCGgUGGCcGuGCCGCg -3'
miRNA:   3'- uUAUGuGC-----CGGUUGUgACCG-C-CGGCG- -5'
26822 3' -57 NC_005809.1 + 9326 0.71 0.256117
Target:  5'- --cGCAC-GUCGGCGCggcgGGCGGCgGCa -3'
miRNA:   3'- uuaUGUGcCGGUUGUGa---CCGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 9661 0.67 0.479783
Target:  5'- --cGCGCGGaac-CGCUGGaaaaGGCCGUg -3'
miRNA:   3'- uuaUGUGCCgguuGUGACCg---CCGGCG- -5'
26822 3' -57 NC_005809.1 + 9880 0.67 0.469477
Target:  5'- --cACGCGGCgAGCACgucGGCGaaCUGCu -3'
miRNA:   3'- uuaUGUGCCGgUUGUGa--CCGCc-GGCG- -5'
26822 3' -57 NC_005809.1 + 10205 0.69 0.347224
Target:  5'- -cUGgGCGGCCGGgGCcucGGCGGCgacCGCa -3'
miRNA:   3'- uuAUgUGCCGGUUgUGa--CCGCCG---GCG- -5'
26822 3' -57 NC_005809.1 + 10468 0.69 0.355784
Target:  5'- --gGCAgCGGCCAGgGCguugagcaacGCGGCCGUg -3'
miRNA:   3'- uuaUGU-GCCGGUUgUGac--------CGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 10714 0.67 0.42944
Target:  5'- -uUGCACGGCgAg----GGCGuGCCGCa -3'
miRNA:   3'- uuAUGUGCCGgUugugaCCGC-CGGCG- -5'
26822 3' -57 NC_005809.1 + 11168 0.75 0.144445
Target:  5'- --cGCACGuuGCguGCGCUGGuCGGCCGUg -3'
miRNA:   3'- uuaUGUGC--CGguUGUGACC-GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 12007 0.72 0.206937
Target:  5'- --cACGuCGGCCAGCAgc-GCGGCCGUg -3'
miRNA:   3'- uuaUGU-GCCGGUUGUgacCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 12485 0.67 0.469477
Target:  5'- --gACAagGGCCGugGCgcccgGGCG-CCGCa -3'
miRNA:   3'- uuaUGUg-CCGGUugUGa----CCGCcGGCG- -5'
26822 3' -57 NC_005809.1 + 12563 0.69 0.338813
Target:  5'- --gGCGCGGCCGugcaguuggaGCACgaUGGCccguucgacGGCUGCa -3'
miRNA:   3'- uuaUGUGCCGGU----------UGUG--ACCG---------CCGGCG- -5'
26822 3' -57 NC_005809.1 + 12565 0.67 0.459286
Target:  5'- -uUGC-CGGCCucGCGCUGcGCGGCg-- -3'
miRNA:   3'- uuAUGuGCCGGu-UGUGAC-CGCCGgcg -5'
26822 3' -57 NC_005809.1 + 13089 0.69 0.347224
Target:  5'- --gACACGaCCGACGC-GGaacuGGCCGCg -3'
miRNA:   3'- uuaUGUGCcGGUUGUGaCCg---CCGGCG- -5'
26822 3' -57 NC_005809.1 + 13901 0.72 0.212607
Target:  5'- --gGCGC-GCC-GCGCUGGCgaGGCCGCc -3'
miRNA:   3'- uuaUGUGcCGGuUGUGACCG--CCGGCG- -5'
26822 3' -57 NC_005809.1 + 14014 0.77 0.102568
Target:  5'- cGUGCGCGccGCgAugGCcGGCGGCCGCa -3'
miRNA:   3'- uUAUGUGC--CGgUugUGaCCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 14369 0.67 0.439263
Target:  5'- --gGCGUGGCCGAC-CUGGacaagGcGCCGCa -3'
miRNA:   3'- uuaUGUGCCGGUUGuGACCg----C-CGGCG- -5'
26822 3' -57 NC_005809.1 + 14576 0.67 0.479783
Target:  5'- -cUAC-CgGGCUGAUGCcGGCGGCCGa -3'
miRNA:   3'- uuAUGuG-CCGGUUGUGaCCGCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.