miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 3863 0.67 0.449213
Target:  5'- uGUAcCAgGcGCCGuCGCUGuaGGCCGCg -3'
miRNA:   3'- uUAU-GUgC-CGGUuGUGACcgCCGGCG- -5'
26822 3' -57 NC_005809.1 + 4258 0.69 0.355784
Target:  5'- cGGUGC-CGGCCGucaGCGCcGGCauggugauGGCCGUg -3'
miRNA:   3'- -UUAUGuGCCGGU---UGUGaCCG--------CCGGCG- -5'
26822 3' -57 NC_005809.1 + 4634 0.75 0.148566
Target:  5'- gGAUGCugGGCC-ACGCUGcGuCGGCCa- -3'
miRNA:   3'- -UUAUGugCCGGuUGUGAC-C-GCCGGcg -5'
26822 3' -57 NC_005809.1 + 5096 0.68 0.395181
Target:  5'- --cAgGCGGCCGGCccagcguccggugcgGCUGGC-GCCGUu -3'
miRNA:   3'- uuaUgUGCCGGUUG---------------UGACCGcCGGCG- -5'
26822 3' -57 NC_005809.1 + 5138 0.71 0.242987
Target:  5'- -cUGCaACGuGCC-GCGCaGGCGGCCGUc -3'
miRNA:   3'- uuAUG-UGC-CGGuUGUGaCCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 5343 0.77 0.105569
Target:  5'- --aGCAUGGCaucGCGCUGcGUGGCCGCc -3'
miRNA:   3'- uuaUGUGCCGgu-UGUGAC-CGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 5565 0.68 0.419748
Target:  5'- cGGUAUcgACGgcGCCAACGCUGGCcGCCa- -3'
miRNA:   3'- -UUAUG--UGC--CGGUUGUGACCGcCGGcg -5'
26822 3' -57 NC_005809.1 + 5633 0.77 0.102568
Target:  5'- --gGCGCGGCgCAGCuuGCUGGUGGCUGg -3'
miRNA:   3'- uuaUGUGCCG-GUUG--UGACCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 6353 0.68 0.41019
Target:  5'- --cGCcCGGCCcgaaggccggGGCGCUGGguuacaccagguCGGCCGCc -3'
miRNA:   3'- uuaUGuGCCGG----------UUGUGACC------------GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 6593 0.77 0.105569
Target:  5'- --aGCACGGCCGGCACcacguagagcaUGGCGuaguccGCCGCc -3'
miRNA:   3'- uuaUGUGCCGGUUGUG-----------ACCGC------CGGCG- -5'
26822 3' -57 NC_005809.1 + 6716 0.67 0.449213
Target:  5'- --aACACGGUgAaaagccgcuGCGCUgGGCcGCCGCg -3'
miRNA:   3'- uuaUGUGCCGgU---------UGUGA-CCGcCGGCG- -5'
26822 3' -57 NC_005809.1 + 7055 0.66 0.532841
Target:  5'- --cGCAUGGCCu---CgGGCGGCaGCg -3'
miRNA:   3'- uuaUGUGCCGGuuguGaCCGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 7490 0.72 0.21841
Target:  5'- uGGUAUA-GGCCccuuGCaACUGGCGGCgCGCg -3'
miRNA:   3'- -UUAUGUgCCGGu---UG-UGACCGCCG-GCG- -5'
26822 3' -57 NC_005809.1 + 7667 0.67 0.449213
Target:  5'- cGUACACGcGCCGuucuUUGGCGGCgaucUGCg -3'
miRNA:   3'- uUAUGUGC-CGGUugu-GACCGCCG----GCG- -5'
26822 3' -57 NC_005809.1 + 8123 0.71 0.262898
Target:  5'- --cGCGCGGCCGGCGUUGGUugugGGCgUGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGUGACCG----CCG-GCG- -5'
26822 3' -57 NC_005809.1 + 8168 0.67 0.449212
Target:  5'- --gAUGCGGCCcaggaaGGCGCUGGCGuCCuGCc -3'
miRNA:   3'- uuaUGUGCCGG------UUGUGACCGCcGG-CG- -5'
26822 3' -57 NC_005809.1 + 8208 0.78 0.08619
Target:  5'- --cGCACGGCCucguagucGCGCUggucGGCGGCCGUc -3'
miRNA:   3'- uuaUGUGCCGGu-------UGUGA----CCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 8216 0.67 0.459285
Target:  5'- ----gGCGGCCAGuuCgUGcGCGGCCGUg -3'
miRNA:   3'- uuaugUGCCGGUUguG-AC-CGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 8663 0.76 0.12537
Target:  5'- --cGCGCGGUCGGCAUU-GCGuGCCGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGUGAcCGC-CGGCG- -5'
26822 3' -57 NC_005809.1 + 8783 0.74 0.161576
Target:  5'- --cACGCGGC--GCACgaugGGuCGGCCGCg -3'
miRNA:   3'- uuaUGUGCCGguUGUGa---CC-GCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.