Results 21 - 40 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26822 | 3' | -57 | NC_005809.1 | + | 455 | 0.75 | 0.128988 |
Target: 5'- -cUGCGCGGCCAGCuuGCgGGCGcuGUCGCg -3' miRNA: 3'- uuAUGUGCCGGUUG--UGaCCGC--CGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 33533 | 0.75 | 0.136516 |
Target: 5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 33485 | 0.75 | 0.136516 |
Target: 5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 33389 | 0.75 | 0.136516 |
Target: 5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 33245 | 0.75 | 0.136516 |
Target: 5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 1965 | 0.75 | 0.139638 |
Target: 5'- --cGCGCGGCCcugggggaaggcACGCUGuaGGCCGCg -3' miRNA: 3'- uuaUGUGCCGGu-----------UGUGACcgCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 888 | 0.75 | 0.140429 |
Target: 5'- --aGCAgGGCCAGCAUggUGGgguucauccCGGCCGCg -3' miRNA: 3'- uuaUGUgCCGGUUGUG--ACC---------GCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 11168 | 0.75 | 0.144445 |
Target: 5'- --cGCACGuuGCguGCGCUGGuCGGCCGUg -3' miRNA: 3'- uuaUGUGC--CGguUGUGACC-GCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 37957 | 0.75 | 0.148566 |
Target: 5'- --aGCGCgGGCCAACAUUGGCcuGGCUGa -3' miRNA: 3'- uuaUGUG-CCGGUUGUGACCG--CCGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 4634 | 0.75 | 0.148566 |
Target: 5'- gGAUGCugGGCC-ACGCUGcGuCGGCCa- -3' miRNA: 3'- -UUAUGugCCGGuUGUGAC-C-GCCGGcg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 21175 | 0.74 | 0.152793 |
Target: 5'- --aGCGCGGCCu--GCUGcGCGGCCuGCu -3' miRNA: 3'- uuaUGUGCCGGuugUGAC-CGCCGG-CG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 14741 | 0.74 | 0.152793 |
Target: 5'- --gGCGCGGCCGGCGCcaccgcgGGCaGCgCGCg -3' miRNA: 3'- uuaUGUGCCGGUUGUGa------CCGcCG-GCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 8783 | 0.74 | 0.161576 |
Target: 5'- --cACGCGGC--GCACgaugGGuCGGCCGCg -3' miRNA: 3'- uuaUGUGCCGguUGUGa---CC-GCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 1463 | 0.74 | 0.166137 |
Target: 5'- --gGCGCGGUCGGCGgccucCUGGCaGGCCGg -3' miRNA: 3'- uuaUGUGCCGGUUGU-----GACCG-CCGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 21748 | 0.73 | 0.201398 |
Target: 5'- --gGCGCGGCCGcguccACAUaGGacaGGCCGCc -3' miRNA: 3'- uuaUGUGCCGGU-----UGUGaCCg--CCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 12007 | 0.72 | 0.206937 |
Target: 5'- --cACGuCGGCCAGCAgc-GCGGCCGUg -3' miRNA: 3'- uuaUGU-GCCGGUUGUgacCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 16303 | 0.72 | 0.206937 |
Target: 5'- cGAUGCGCGaGCCGACcagGCcGGCGGgUGCc -3' miRNA: 3'- -UUAUGUGC-CGGUUG---UGaCCGCCgGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 8846 | 0.72 | 0.212607 |
Target: 5'- --aACGCgGGCCAGCGCguUGGCcucGGUCGCc -3' miRNA: 3'- uuaUGUG-CCGGUUGUG--ACCG---CCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 26626 | 0.72 | 0.212607 |
Target: 5'- --gACAUGGCCuACGCgaaGGCG-CCGCa -3' miRNA: 3'- uuaUGUGCCGGuUGUGa--CCGCcGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 13901 | 0.72 | 0.212607 |
Target: 5'- --gGCGC-GCC-GCGCUGGCgaGGCCGCc -3' miRNA: 3'- uuaUGUGcCGGuUGUGACCG--CCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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