miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 9107 0.66 0.500718
Target:  5'- cGUGC-CGgauucGCCAGCGgUGGCcGuGCCGCg -3'
miRNA:   3'- uUAUGuGC-----CGGUUGUgACCG-C-CGGCG- -5'
26822 3' -57 NC_005809.1 + 393 0.66 0.494394
Target:  5'- --aGCGCGGCCAGCGC--GCGacuguugagcagcacGUCGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGUGacCGC---------------CGGCG- -5'
26822 3' -57 NC_005809.1 + 26280 0.66 0.529594
Target:  5'- cGUGCGCGacgacgaccggguaGCCuuC-CgGGUGGCCGCg -3'
miRNA:   3'- uUAUGUGC--------------CGGuuGuGaCCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 34190 0.66 0.522045
Target:  5'- -cUACGCaGCCAGCGCga--GGCCGg -3'
miRNA:   3'- uuAUGUGcCGGUUGUGaccgCCGGCg -5'
26822 3' -57 NC_005809.1 + 3794 0.66 0.511335
Target:  5'- cGGUACGguCGGgCAGCAUgaccaGGCGGUCGg -3'
miRNA:   3'- -UUAUGU--GCCgGUUGUGa----CCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 9251 0.66 0.500718
Target:  5'- cGUGC-CGgauucGCCAGCGgUGGCcGuGCCGCg -3'
miRNA:   3'- uUAUGuGC-----CGGUUGUgACCG-C-CGGCG- -5'
26822 3' -57 NC_005809.1 + 17026 0.66 0.511335
Target:  5'- --gACAucauCGGCUAcggggGCGCUgccGGCGGCgGCa -3'
miRNA:   3'- uuaUGU----GCCGGU-----UGUGA---CCGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 35937 0.66 0.511335
Target:  5'- --gACAcucCGGCCAAgcgcgcgaaGCUGGCGGCgGa -3'
miRNA:   3'- uuaUGU---GCCGGUUg--------UGACCGCCGgCg -5'
26822 3' -57 NC_005809.1 + 14576 0.67 0.479783
Target:  5'- -cUAC-CgGGCUGAUGCcGGCGGCCGa -3'
miRNA:   3'- uuAUGuG-CCGGUUGUGaCCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 37932 0.67 0.429441
Target:  5'- --cGCgAUGGCCGACGCaGcGUGGCCcaGCa -3'
miRNA:   3'- uuaUG-UGCCGGUUGUGaC-CGCCGG--CG- -5'
26822 3' -57 NC_005809.1 + 22348 0.67 0.479783
Target:  5'- --gGCACccaaGGCCAACAgc--CGGCCGCg -3'
miRNA:   3'- uuaUGUG----CCGGUUGUgaccGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 16479 0.67 0.479783
Target:  5'- --cGCACGGUguAcCACUGGauugaGGcCCGCc -3'
miRNA:   3'- uuaUGUGCCGguU-GUGACCg----CC-GGCG- -5'
26822 3' -57 NC_005809.1 + 26529 0.67 0.469477
Target:  5'- cGUGCGCgaacuGGCCuACaACUGGCaGGCCa- -3'
miRNA:   3'- uUAUGUG-----CCGGuUG-UGACCG-CCGGcg -5'
26822 3' -57 NC_005809.1 + 14904 0.67 0.439263
Target:  5'- -cUGCGCGGCgAucuGCuGCUGGCcGGCCu- -3'
miRNA:   3'- uuAUGUGCCGgU---UG-UGACCG-CCGGcg -5'
26822 3' -57 NC_005809.1 + 40697 0.67 0.439263
Target:  5'- --cACcCGGCCAGCGCcGGCcacgGGCUGa -3'
miRNA:   3'- uuaUGuGCCGGUUGUGaCCG----CCGGCg -5'
26822 3' -57 NC_005809.1 + 3863 0.67 0.449213
Target:  5'- uGUAcCAgGcGCCGuCGCUGuaGGCCGCg -3'
miRNA:   3'- uUAU-GUgC-CGGUuGUGACcgCCGGCG- -5'
26822 3' -57 NC_005809.1 + 24560 0.67 0.469477
Target:  5'- --aGCGCGGCgAugGCgaGGCcGGCCa- -3'
miRNA:   3'- uuaUGUGCCGgUugUGa-CCG-CCGGcg -5'
26822 3' -57 NC_005809.1 + 1385 0.67 0.479783
Target:  5'- ---cCGCGGCCAcgcGCACaacGGUuucacucauGGCCGCc -3'
miRNA:   3'- uuauGUGCCGGU---UGUGa--CCG---------CCGGCG- -5'
26822 3' -57 NC_005809.1 + 26321 0.67 0.479783
Target:  5'- --gGCACGGUCuuGACgcgcaccgcgaACUGGCcGcGCCGCu -3'
miRNA:   3'- uuaUGUGCCGG--UUG-----------UGACCG-C-CGGCG- -5'
26822 3' -57 NC_005809.1 + 9661 0.67 0.479783
Target:  5'- --cGCGCGGaac-CGCUGGaaaaGGCCGUg -3'
miRNA:   3'- uuaUGUGCCgguuGUGACCg---CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.