miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 35937 0.66 0.511335
Target:  5'- --gACAcucCGGCCAAgcgcgcgaaGCUGGCGGCgGa -3'
miRNA:   3'- uuaUGU---GCCGGUUg--------UGACCGCCGgCg -5'
26822 3' -57 NC_005809.1 + 9251 0.66 0.500718
Target:  5'- cGUGC-CGgauucGCCAGCGgUGGCcGuGCCGCg -3'
miRNA:   3'- uUAUGuGC-----CGGUUGUgACCG-C-CGGCG- -5'
26822 3' -57 NC_005809.1 + 1763 0.66 0.532841
Target:  5'- --gGC-CGGCCuGCGcCUGGCGcGUCGg -3'
miRNA:   3'- uuaUGuGCCGGuUGU-GACCGC-CGGCg -5'
26822 3' -57 NC_005809.1 + 3794 0.66 0.511335
Target:  5'- cGGUACGguCGGgCAGCAUgaccaGGCGGUCGg -3'
miRNA:   3'- -UUAUGU--GCCgGUUGUGa----CCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 414 0.66 0.522046
Target:  5'- --aGCACGGCgGugAUcGuCGGCCGUa -3'
miRNA:   3'- uuaUGUGCCGgUugUGaCcGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 36760 0.66 0.488107
Target:  5'- --gGCAC-GCCAugcccgacuaucCGCUGGCGcuGCCGCg -3'
miRNA:   3'- uuaUGUGcCGGUu-----------GUGACCGC--CGGCG- -5'
26822 3' -57 NC_005809.1 + 25126 0.66 0.511335
Target:  5'- --gGCACcuGGCCucGAUGCUGGCGGggccaCUGCu -3'
miRNA:   3'- uuaUGUG--CCGG--UUGUGACCGCC-----GGCG- -5'
26822 3' -57 NC_005809.1 + 9107 0.66 0.500718
Target:  5'- cGUGC-CGgauucGCCAGCGgUGGCcGuGCCGCg -3'
miRNA:   3'- uUAUGuGC-----CGGUUGUgACCG-C-CGGCG- -5'
26822 3' -57 NC_005809.1 + 14689 0.66 0.499661
Target:  5'- cGUGCugGGCgAGCACgccaagaUGGCGaG-CGCg -3'
miRNA:   3'- uUAUGugCCGgUUGUG-------ACCGC-CgGCG- -5'
26822 3' -57 NC_005809.1 + 32918 0.66 0.490199
Target:  5'- ---cCACGGCCuGCAC-GGCuGCUGUu -3'
miRNA:   3'- uuauGUGCCGGuUGUGaCCGcCGGCG- -5'
26822 3' -57 NC_005809.1 + 685 0.66 0.532842
Target:  5'- ---cUACGG-CGGCGCcGGCcgGGCCGCc -3'
miRNA:   3'- uuauGUGCCgGUUGUGaCCG--CCGGCG- -5'
26822 3' -57 NC_005809.1 + 35168 0.66 0.51027
Target:  5'- cGGUGCcCGGCUucaaGCUGGUGgaaggucGCCGCg -3'
miRNA:   3'- -UUAUGuGCCGGuug-UGACCGC-------CGGCG- -5'
26822 3' -57 NC_005809.1 + 393 0.66 0.494394
Target:  5'- --aGCGCGGCCAGCGC--GCGacuguugagcagcacGUCGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGUGacCGC---------------CGGCG- -5'
26822 3' -57 NC_005809.1 + 17026 0.66 0.511335
Target:  5'- --gACAucauCGGCUAcggggGCGCUgccGGCGGCgGCa -3'
miRNA:   3'- uuaUGU----GCCGGU-----UGUGA---CCGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 41430 0.66 0.522046
Target:  5'- ----gACGGCgAGCGCaaaCGGCCGCu -3'
miRNA:   3'- uuaugUGCCGgUUGUGaccGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 37626 0.66 0.490199
Target:  5'- cGAUACGCGGCU-GCAUcgUGGCGcCCGa -3'
miRNA:   3'- -UUAUGUGCCGGuUGUG--ACCGCcGGCg -5'
26822 3' -57 NC_005809.1 + 1223 0.66 0.532842
Target:  5'- ---uCAUGGCCGAUGa-GGCGGUCGa -3'
miRNA:   3'- uuauGUGCCGGUUGUgaCCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 724 0.66 0.511335
Target:  5'- ---cCACGGCCAagucgaGCGcCUGGCGGaugaCCGa -3'
miRNA:   3'- uuauGUGCCGGU------UGU-GACCGCC----GGCg -5'
26822 3' -57 NC_005809.1 + 21575 0.66 0.522046
Target:  5'- cGUGCcgcuCGGCCAcuuCGgUGGCGGUCa- -3'
miRNA:   3'- uUAUGu---GCCGGUu--GUgACCGCCGGcg -5'
26822 3' -57 NC_005809.1 + 38721 0.66 0.526354
Target:  5'- --aGCugGGCgGcgaggugcgcaaaguGCGCUGGauuGGUCGCa -3'
miRNA:   3'- uuaUGugCCGgU---------------UGUGACCg--CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.