Results 1 - 20 of 158 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26822 | 3' | -57 | NC_005809.1 | + | 38977 | 1.1 | 0.000351 |
Target: 5'- gAAUACACGGCCAACACUGGCGGCCGCg -3' miRNA: 3'- -UUAUGUGCCGGUUGUGACCGCCGGCG- -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 38553 | 0.82 | 0.041197 |
Target: 5'- --cGCGCGGCaUGACGCUGGUGGCCGg -3' miRNA: 3'- uuaUGUGCCG-GUUGUGACCGCCGGCg -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 29410 | 0.79 | 0.068194 |
Target: 5'- --aGCGCGGCCGACACUGGCcgacaucgaGG-CGCa -3' miRNA: 3'- uuaUGUGCCGGUUGUGACCG---------CCgGCG- -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 8208 | 0.78 | 0.08619 |
Target: 5'- --cGCACGGCCucguagucGCGCUggucGGCGGCCGUc -3' miRNA: 3'- uuaUGUGCCGGu-------UGUGA----CCGCCGGCG- -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 23297 | 0.77 | 0.099937 |
Target: 5'- gAAUGCcuguuuGCGGCCGGCACUGGCcgggaugacgugguaGCCGCg -3' miRNA: 3'- -UUAUG------UGCCGGUUGUGACCGc--------------CGGCG- -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 5633 | 0.77 | 0.102568 |
Target: 5'- --gGCGCGGCgCAGCuuGCUGGUGGCUGg -3' miRNA: 3'- uuaUGUGCCG-GUUG--UGACCGCCGGCg -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 14014 | 0.77 | 0.102568 |
Target: 5'- cGUGCGCGccGCgAugGCcGGCGGCCGCa -3' miRNA: 3'- uUAUGUGC--CGgUugUGaCCGCCGGCG- -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 6593 | 0.77 | 0.105569 |
Target: 5'- --aGCACGGCCGGCACcacguagagcaUGGCGuaguccGCCGCc -3' miRNA: 3'- uuaUGUGCCGGUUGUG-----------ACCGC------CGGCG- -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 5343 | 0.77 | 0.105569 |
Target: 5'- --aGCAUGGCaucGCGCUGcGUGGCCGCc -3' miRNA: 3'- uuaUGUGCCGgu-UGUGAC-CGCCGGCG- -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 33653 | 0.76 | 0.111819 |
Target: 5'- --gGCACGGCCAcCGCUGGCGaGaaaggagaacuCCGCa -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCGC-C-----------GGCG- -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 38379 | 0.76 | 0.114415 |
Target: 5'- cGUGCucGCGGCCAACAUgcccgccaucgaGGCGGCCGg -3' miRNA: 3'- uUAUG--UGCCGGUUGUGa-----------CCGCCGGCg -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 38300 | 0.76 | 0.115072 |
Target: 5'- --gACACGGCCAucaccaugccgGCGCUGaCGGCCGg -3' miRNA: 3'- uuaUGUGCCGGU-----------UGUGACcGCCGGCg -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 33581 | 0.76 | 0.118414 |
Target: 5'- --gGCACGGCCAcCGCUGGCuaucGCgGCa -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCGc---CGgCG- -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 33437 | 0.76 | 0.118414 |
Target: 5'- --gGCACGGCCAcCGCUGGCuaucGCgGCa -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCGc---CGgCG- -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 33293 | 0.76 | 0.118414 |
Target: 5'- --gGCACGGCCAcCGCUGGCuaucGCgGCa -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCGc---CGgCG- -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 8663 | 0.76 | 0.12537 |
Target: 5'- --cGCGCGGUCGGCAUU-GCGuGCCGCg -3' miRNA: 3'- uuaUGUGCCGGUUGUGAcCGC-CGGCG- -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 33365 | 0.76 | 0.12537 |
Target: 5'- --gGCACGGCCAcCGCUGGCGaauCCGg -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCGCc--GGCg -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 33221 | 0.76 | 0.12537 |
Target: 5'- --gGCACGGCCAcCGCUGGCGaauCCGg -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCGCc--GGCg -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 33197 | 0.76 | 0.12537 |
Target: 5'- --gGCACGGCCAcCGCUGGCGaauCCGg -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCGCc--GGCg -5' |
|||||||
26822 | 3' | -57 | NC_005809.1 | + | 33341 | 0.76 | 0.12537 |
Target: 5'- --gGCACGGCCAcCGCUGGCGaauCCGg -3' miRNA: 3'- uuaUGUGCCGGUuGUGACCGCc--GGCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home