miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 213 0.68 0.397968
Target:  5'- --gACACGGCgaacuggcgcaccuCGGCAUUGGCGcGCUGg -3'
miRNA:   3'- uuaUGUGCCG--------------GUUGUGACCGC-CGGCg -5'
26822 3' -57 NC_005809.1 + 393 0.66 0.494394
Target:  5'- --aGCGCGGCCAGCGC--GCGacuguugagcagcacGUCGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGUGacCGC---------------CGGCG- -5'
26822 3' -57 NC_005809.1 + 414 0.66 0.522046
Target:  5'- --aGCACGGCgGugAUcGuCGGCCGUa -3'
miRNA:   3'- uuaUGUGCCGgUugUGaCcGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 455 0.75 0.128988
Target:  5'- -cUGCGCGGCCAGCuuGCgGGCGcuGUCGCg -3'
miRNA:   3'- uuAUGUGCCGGUUG--UGaCCGC--CGGCG- -5'
26822 3' -57 NC_005809.1 + 685 0.66 0.532842
Target:  5'- ---cUACGG-CGGCGCcGGCcgGGCCGCc -3'
miRNA:   3'- uuauGUGCCgGUUGUGaCCG--CCGGCG- -5'
26822 3' -57 NC_005809.1 + 724 0.66 0.511335
Target:  5'- ---cCACGGCCAagucgaGCGcCUGGCGGaugaCCGa -3'
miRNA:   3'- uuauGUGCCGGU------UGU-GACCGCC----GGCg -5'
26822 3' -57 NC_005809.1 + 888 0.75 0.140429
Target:  5'- --aGCAgGGCCAGCAUggUGGgguucauccCGGCCGCg -3'
miRNA:   3'- uuaUGUgCCGGUUGUG--ACC---------GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 1223 0.66 0.532842
Target:  5'- ---uCAUGGCCGAUGa-GGCGGUCGa -3'
miRNA:   3'- uuauGUGCCGGUUGUgaCCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 1385 0.67 0.479783
Target:  5'- ---cCGCGGCCAcgcGCACaacGGUuucacucauGGCCGCc -3'
miRNA:   3'- uuauGUGCCGGU---UGUGa--CCG---------CCGGCG- -5'
26822 3' -57 NC_005809.1 + 1463 0.74 0.166137
Target:  5'- --gGCGCGGUCGGCGgccucCUGGCaGGCCGg -3'
miRNA:   3'- uuaUGUGCCGGUUGU-----GACCG-CCGGCg -5'
26822 3' -57 NC_005809.1 + 1763 0.66 0.532841
Target:  5'- --gGC-CGGCCuGCGcCUGGCGcGUCGg -3'
miRNA:   3'- uuaUGuGCCGGuUGU-GACCGC-CGGCg -5'
26822 3' -57 NC_005809.1 + 1866 0.66 0.522045
Target:  5'- -uUGCAgguucagcccgUGGCCGGCGCUGGcCGGgUGg -3'
miRNA:   3'- uuAUGU-----------GCCGGUUGUGACC-GCCgGCg -5'
26822 3' -57 NC_005809.1 + 1965 0.75 0.139638
Target:  5'- --cGCGCGGCCcugggggaaggcACGCUGuaGGCCGCg -3'
miRNA:   3'- uuaUGUGCCGGu-----------UGUGACcgCCGGCG- -5'
26822 3' -57 NC_005809.1 + 2016 0.7 0.322437
Target:  5'- uGGUACGCcaCCAGCACcGGCauaccGGCCGCc -3'
miRNA:   3'- -UUAUGUGccGGUUGUGaCCG-----CCGGCG- -5'
26822 3' -57 NC_005809.1 + 2388 0.7 0.298995
Target:  5'- --cGCACGGCa-----UGGCGGUCGCu -3'
miRNA:   3'- uuaUGUGCCGguugugACCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 2570 0.7 0.29148
Target:  5'- --gACACGGcCCAGCGCgUGcGCGcgcuuGCCGCc -3'
miRNA:   3'- uuaUGUGCC-GGUUGUG-AC-CGC-----CGGCG- -5'
26822 3' -57 NC_005809.1 + 2591 0.68 0.373345
Target:  5'- -uUGCAaGGCCAGCAggUUGGCgaGGUCGUa -3'
miRNA:   3'- uuAUGUgCCGGUUGU--GACCG--CCGGCG- -5'
26822 3' -57 NC_005809.1 + 2739 0.72 0.21841
Target:  5'- --aGCGCGGcCCGGCGCUgcucgGGCGuGCCGa -3'
miRNA:   3'- uuaUGUGCC-GGUUGUGA-----CCGC-CGGCg -5'
26822 3' -57 NC_005809.1 + 3574 0.71 0.262898
Target:  5'- --gGCugGGCguACACcgauccGCGGCCGCc -3'
miRNA:   3'- uuaUGugCCGguUGUGac----CGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 3794 0.66 0.511335
Target:  5'- cGGUACGguCGGgCAGCAUgaccaGGCGGUCGg -3'
miRNA:   3'- -UUAUGU--GCCgGUUGUGa----CCGCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.