miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 42158 0.72 0.214912
Target:  5'- ---gUACGGCCGACgaucaccgccgugcuGCUGGUGGgCGCc -3'
miRNA:   3'- uuauGUGCCGGUUG---------------UGACCGCCgGCG- -5'
26822 3' -57 NC_005809.1 + 41972 0.68 0.382343
Target:  5'- -cUGC-UGGCCGACccGCaGGCGGCCa- -3'
miRNA:   3'- uuAUGuGCCGGUUG--UGaCCGCCGGcg -5'
26822 3' -57 NC_005809.1 + 41892 0.66 0.52097
Target:  5'- --gGCcCGGCCGGCGCcgccguaggcgccUGGUGGCUa- -3'
miRNA:   3'- uuaUGuGCCGGUUGUG-------------ACCGCCGGcg -5'
26822 3' -57 NC_005809.1 + 41673 0.68 0.390565
Target:  5'- --aGCGCGGUCAACuuCUGgaacaacGCGGCgGCc -3'
miRNA:   3'- uuaUGUGCCGGUUGu-GAC-------CGCCGgCG- -5'
26822 3' -57 NC_005809.1 + 41430 0.66 0.522046
Target:  5'- ----gACGGCgAGCGCaaaCGGCCGCu -3'
miRNA:   3'- uuaugUGCCGgUUGUGaccGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 41242 0.7 0.312113
Target:  5'- ---cCACGGCUuccucgcgcuugucGGC-CUGGUGGCCGUc -3'
miRNA:   3'- uuauGUGCCGG--------------UUGuGACCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 41173 0.68 0.379629
Target:  5'- --gGgGCGGCCAugAgUGaaaccguugugcgcGUGGCCGCg -3'
miRNA:   3'- uuaUgUGCCGGUugUgAC--------------CGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 40697 0.67 0.439263
Target:  5'- --cACcCGGCCAGCGCcGGCcacgGGCUGa -3'
miRNA:   3'- uuaUGuGCCGGUUGUGaCCG----CCGGCg -5'
26822 3' -57 NC_005809.1 + 39736 0.69 0.330551
Target:  5'- uGGUGCugGcGCCGcuGCGC--GUGGCCGCg -3'
miRNA:   3'- -UUAUGugC-CGGU--UGUGacCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 39301 0.68 0.395181
Target:  5'- --gGCACgGGCCGACuauCUGGCGcggaagcugaaucccGCCGg -3'
miRNA:   3'- uuaUGUG-CCGGUUGu--GACCGC---------------CGGCg -5'
26822 3' -57 NC_005809.1 + 38977 1.1 0.000351
Target:  5'- gAAUACACGGCCAACACUGGCGGCCGCg -3'
miRNA:   3'- -UUAUGUGCCGGUUGUGACCGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 38721 0.66 0.526354
Target:  5'- --aGCugGGCgGcgaggugcgcaaaguGCGCUGGauuGGUCGCa -3'
miRNA:   3'- uuaUGugCCGgU---------------UGUGACCg--CCGGCG- -5'
26822 3' -57 NC_005809.1 + 38553 0.82 0.041197
Target:  5'- --cGCGCGGCaUGACGCUGGUGGCCGg -3'
miRNA:   3'- uuaUGUGCCG-GUUGUGACCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 38379 0.76 0.114415
Target:  5'- cGUGCucGCGGCCAACAUgcccgccaucgaGGCGGCCGg -3'
miRNA:   3'- uUAUG--UGCCGGUUGUGa-----------CCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 38300 0.76 0.115072
Target:  5'- --gACACGGCCAucaccaugccgGCGCUGaCGGCCGg -3'
miRNA:   3'- uuaUGUGCCGGU-----------UGUGACcGCCGGCg -5'
26822 3' -57 NC_005809.1 + 38122 0.7 0.29148
Target:  5'- uGUGCAUGacgguGCCAcCGCUGGCGGCuucccccuggCGCg -3'
miRNA:   3'- uUAUGUGC-----CGGUuGUGACCGCCG----------GCG- -5'
26822 3' -57 NC_005809.1 + 37957 0.75 0.148566
Target:  5'- --aGCGCgGGCCAACAUUGGCcuGGCUGa -3'
miRNA:   3'- uuaUGUG-CCGGUUGUGACCG--CCGGCg -5'
26822 3' -57 NC_005809.1 + 37932 0.67 0.429441
Target:  5'- --cGCgAUGGCCGACGCaGcGUGGCCcaGCa -3'
miRNA:   3'- uuaUG-UGCCGGUUGUGaC-CGCCGG--CG- -5'
26822 3' -57 NC_005809.1 + 37626 0.66 0.490199
Target:  5'- cGAUACGCGGCU-GCAUcgUGGCGcCCGa -3'
miRNA:   3'- -UUAUGUGCCGGuUGUG--ACCGCcGGCg -5'
26822 3' -57 NC_005809.1 + 37466 0.68 0.419748
Target:  5'- --gGCGCcaGCCGcaccggACGCUGGgcCGGCCGCc -3'
miRNA:   3'- uuaUGUGc-CGGU------UGUGACC--GCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.