miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 21175 0.74 0.152793
Target:  5'- --aGCGCGGCCu--GCUGcGCGGCCuGCu -3'
miRNA:   3'- uuaUGUGCCGGuugUGAC-CGCCGG-CG- -5'
26822 3' -57 NC_005809.1 + 8663 0.76 0.12537
Target:  5'- --cGCGCGGUCGGCAUU-GCGuGCCGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGUGAcCGC-CGGCG- -5'
26822 3' -57 NC_005809.1 + 455 0.75 0.128988
Target:  5'- -cUGCGCGGCCAGCuuGCgGGCGcuGUCGCg -3'
miRNA:   3'- uuAUGUGCCGGUUG--UGaCCGC--CGGCG- -5'
26822 3' -57 NC_005809.1 + 33245 0.75 0.136516
Target:  5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5'
26822 3' -57 NC_005809.1 + 33389 0.75 0.136516
Target:  5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5'
26822 3' -57 NC_005809.1 + 33485 0.75 0.136516
Target:  5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5'
26822 3' -57 NC_005809.1 + 33533 0.75 0.136516
Target:  5'- --gGCACGGCCAcCGCUGGCaauuacggcacGGCCa- -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCG-----------CCGGcg -5'
26822 3' -57 NC_005809.1 + 888 0.75 0.140429
Target:  5'- --aGCAgGGCCAGCAUggUGGgguucauccCGGCCGCg -3'
miRNA:   3'- uuaUGUgCCGGUUGUG--ACC---------GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 11168 0.75 0.144445
Target:  5'- --cGCACGuuGCguGCGCUGGuCGGCCGUg -3'
miRNA:   3'- uuaUGUGC--CGguUGUGACC-GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 33365 0.76 0.12537
Target:  5'- --gGCACGGCCAcCGCUGGCGaauCCGg -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGCc--GGCg -5'
26822 3' -57 NC_005809.1 + 33341 0.76 0.12537
Target:  5'- --gGCACGGCCAcCGCUGGCGaauCCGg -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGCc--GGCg -5'
26822 3' -57 NC_005809.1 + 33221 0.76 0.12537
Target:  5'- --gGCACGGCCAcCGCUGGCGaauCCGg -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGCc--GGCg -5'
26822 3' -57 NC_005809.1 + 23297 0.77 0.099937
Target:  5'- gAAUGCcuguuuGCGGCCGGCACUGGCcgggaugacgugguaGCCGCg -3'
miRNA:   3'- -UUAUG------UGCCGGUUGUGACCGc--------------CGGCG- -5'
26822 3' -57 NC_005809.1 + 6593 0.77 0.105569
Target:  5'- --aGCACGGCCGGCACcacguagagcaUGGCGuaguccGCCGCc -3'
miRNA:   3'- uuaUGUGCCGGUUGUG-----------ACCGC------CGGCG- -5'
26822 3' -57 NC_005809.1 + 33653 0.76 0.111819
Target:  5'- --gGCACGGCCAcCGCUGGCGaGaaaggagaacuCCGCa -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGC-C-----------GGCG- -5'
26822 3' -57 NC_005809.1 + 38379 0.76 0.114415
Target:  5'- cGUGCucGCGGCCAACAUgcccgccaucgaGGCGGCCGg -3'
miRNA:   3'- uUAUG--UGCCGGUUGUGa-----------CCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 33293 0.76 0.118414
Target:  5'- --gGCACGGCCAcCGCUGGCuaucGCgGCa -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGc---CGgCG- -5'
26822 3' -57 NC_005809.1 + 33437 0.76 0.118414
Target:  5'- --gGCACGGCCAcCGCUGGCuaucGCgGCa -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGc---CGgCG- -5'
26822 3' -57 NC_005809.1 + 33581 0.76 0.118414
Target:  5'- --gGCACGGCCAcCGCUGGCuaucGCgGCa -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGc---CGgCG- -5'
26822 3' -57 NC_005809.1 + 33197 0.76 0.12537
Target:  5'- --gGCACGGCCAcCGCUGGCGaauCCGg -3'
miRNA:   3'- uuaUGUGCCGGUuGUGACCGCc--GGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.