Results 1 - 20 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26822 | 3' | -57 | NC_005809.1 | + | 38977 | 1.1 | 0.000351 |
Target: 5'- gAAUACACGGCCAACACUGGCGGCCGCg -3' miRNA: 3'- -UUAUGUGCCGGUUGUGACCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 30431 | 0.72 | 0.224348 |
Target: 5'- -cUACGCGGaagcgCAGCGCgUGGCGcGUCGCg -3' miRNA: 3'- uuAUGUGCCg----GUUGUG-ACCGC-CGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 15061 | 0.71 | 0.242987 |
Target: 5'- --gAC-CGcGCCGAgaaGCUGGCGGCCGa -3' miRNA: 3'- uuaUGuGC-CGGUUg--UGACCGCCGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 1763 | 0.66 | 0.532841 |
Target: 5'- --gGC-CGGCCuGCGcCUGGCGcGUCGg -3' miRNA: 3'- uuaUGuGCCGGuUGU-GACCGC-CGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 14014 | 0.77 | 0.102568 |
Target: 5'- cGUGCGCGccGCgAugGCcGGCGGCCGCa -3' miRNA: 3'- uUAUGUGC--CGgUugUGaCCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 5343 | 0.77 | 0.105569 |
Target: 5'- --aGCAUGGCaucGCGCUGcGUGGCCGCc -3' miRNA: 3'- uuaUGUGCCGgu-UGUGAC-CGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 1965 | 0.75 | 0.139638 |
Target: 5'- --cGCGCGGCCcugggggaaggcACGCUGuaGGCCGCg -3' miRNA: 3'- uuaUGUGCCGGu-----------UGUGACcgCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 37957 | 0.75 | 0.148566 |
Target: 5'- --aGCGCgGGCCAACAUUGGCcuGGCUGa -3' miRNA: 3'- uuaUGUG-CCGGUUGUGACCG--CCGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 16303 | 0.72 | 0.206937 |
Target: 5'- cGAUGCGCGaGCCGACcagGCcGGCGGgUGCc -3' miRNA: 3'- -UUAUGUGC-CGGUUG---UGaCCGCCgGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 15111 | 0.72 | 0.223748 |
Target: 5'- cGUGCGCGGC--GCGCUGGCauaccagcgccagGGCCuGCg -3' miRNA: 3'- uUAUGUGCCGguUGUGACCG-------------CCGG-CG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 26626 | 0.72 | 0.212607 |
Target: 5'- --gACAUGGCCuACGCgaaGGCG-CCGCa -3' miRNA: 3'- uuaUGUGCCGGuUGUGa--CCGCcGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 14741 | 0.74 | 0.152793 |
Target: 5'- --gGCGCGGCCGGCGCcaccgcgGGCaGCgCGCg -3' miRNA: 3'- uuaUGUGCCGGUUGUGa------CCGcCG-GCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 38553 | 0.82 | 0.041197 |
Target: 5'- --cGCGCGGCaUGACGCUGGUGGCCGg -3' miRNA: 3'- uuaUGUGCCG-GUUGUGACCGCCGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 42158 | 0.72 | 0.214912 |
Target: 5'- ---gUACGGCCGACgaucaccgccgugcuGCUGGUGGgCGCc -3' miRNA: 3'- uuauGUGCCGGUUG---------------UGACCGCCgGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 29410 | 0.79 | 0.068194 |
Target: 5'- --aGCGCGGCCGACACUGGCcgacaucgaGG-CGCa -3' miRNA: 3'- uuaUGUGCCGGUUGUGACCG---------CCgGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 4634 | 0.75 | 0.148566 |
Target: 5'- gGAUGCugGGCC-ACGCUGcGuCGGCCa- -3' miRNA: 3'- -UUAUGugCCGGuUGUGAC-C-GCCGGcg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 2739 | 0.72 | 0.21841 |
Target: 5'- --aGCGCGGcCCGGCGCUgcucgGGCGuGCCGa -3' miRNA: 3'- uuaUGUGCC-GGUUGUGA-----CCGC-CGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 5138 | 0.71 | 0.242987 |
Target: 5'- -cUGCaACGuGCC-GCGCaGGCGGCCGUc -3' miRNA: 3'- uuAUG-UGC-CGGuUGUGaCCGCCGGCG- -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 5633 | 0.77 | 0.102568 |
Target: 5'- --gGCGCGGCgCAGCuuGCUGGUGGCUGg -3' miRNA: 3'- uuaUGUGCCG-GUUG--UGACCGCCGGCg -5' |
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26822 | 3' | -57 | NC_005809.1 | + | 38300 | 0.76 | 0.115072 |
Target: 5'- --gACACGGCCAucaccaugccgGCGCUGaCGGCCGg -3' miRNA: 3'- uuaUGUGCCGGU-----------UGUGACcGCCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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