miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 35168 0.66 0.51027
Target:  5'- cGGUGCcCGGCUucaaGCUGGUGgaaggucGCCGCg -3'
miRNA:   3'- -UUAUGuGCCGGuug-UGACCGC-------CGGCG- -5'
26822 3' -57 NC_005809.1 + 9107 0.66 0.500718
Target:  5'- cGUGC-CGgauucGCCAGCGgUGGCcGuGCCGCg -3'
miRNA:   3'- uUAUGuGC-----CGGUUGUgACCG-C-CGGCG- -5'
26822 3' -57 NC_005809.1 + 9251 0.66 0.500718
Target:  5'- cGUGC-CGgauucGCCAGCGgUGGCcGuGCCGCg -3'
miRNA:   3'- uUAUGuGC-----CGGUUGUgACCG-C-CGGCG- -5'
26822 3' -57 NC_005809.1 + 14689 0.66 0.499661
Target:  5'- cGUGCugGGCgAGCACgccaagaUGGCGaG-CGCg -3'
miRNA:   3'- uUAUGugCCGgUUGUG-------ACCGC-CgGCG- -5'
26822 3' -57 NC_005809.1 + 393 0.66 0.494394
Target:  5'- --aGCGCGGCCAGCGC--GCGacuguugagcagcacGUCGCg -3'
miRNA:   3'- uuaUGUGCCGGUUGUGacCGC---------------CGGCG- -5'
26822 3' -57 NC_005809.1 + 32918 0.66 0.490199
Target:  5'- ---cCACGGCCuGCAC-GGCuGCUGUu -3'
miRNA:   3'- uuauGUGCCGGuUGUGaCCGcCGGCG- -5'
26822 3' -57 NC_005809.1 + 37626 0.66 0.490199
Target:  5'- cGAUACGCGGCU-GCAUcgUGGCGcCCGa -3'
miRNA:   3'- -UUAUGUGCCGGuUGUG--ACCGCcGGCg -5'
26822 3' -57 NC_005809.1 + 36760 0.66 0.488107
Target:  5'- --gGCAC-GCCAugcccgacuaucCGCUGGCGcuGCCGCg -3'
miRNA:   3'- uuaUGUGcCGGUu-----------GUGACCGC--CGGCG- -5'
26822 3' -57 NC_005809.1 + 1385 0.67 0.479783
Target:  5'- ---cCGCGGCCAcgcGCACaacGGUuucacucauGGCCGCc -3'
miRNA:   3'- uuauGUGCCGGU---UGUGa--CCG---------CCGGCG- -5'
26822 3' -57 NC_005809.1 + 22348 0.67 0.479783
Target:  5'- --gGCACccaaGGCCAACAgc--CGGCCGCg -3'
miRNA:   3'- uuaUGUG----CCGGUUGUgaccGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 16479 0.67 0.479783
Target:  5'- --cGCACGGUguAcCACUGGauugaGGcCCGCc -3'
miRNA:   3'- uuaUGUGCCGguU-GUGACCg----CC-GGCG- -5'
26822 3' -57 NC_005809.1 + 14576 0.67 0.479783
Target:  5'- -cUAC-CgGGCUGAUGCcGGCGGCCGa -3'
miRNA:   3'- uuAUGuG-CCGGUUGUGaCCGCCGGCg -5'
26822 3' -57 NC_005809.1 + 9661 0.67 0.479783
Target:  5'- --cGCGCGGaac-CGCUGGaaaaGGCCGUg -3'
miRNA:   3'- uuaUGUGCCgguuGUGACCg---CCGGCG- -5'
26822 3' -57 NC_005809.1 + 26321 0.67 0.479783
Target:  5'- --gGCACGGUCuuGACgcgcaccgcgaACUGGCcGcGCCGCu -3'
miRNA:   3'- uuaUGUGCCGG--UUG-----------UGACCG-C-CGGCG- -5'
26822 3' -57 NC_005809.1 + 26529 0.67 0.469477
Target:  5'- cGUGCGCgaacuGGCCuACaACUGGCaGGCCa- -3'
miRNA:   3'- uUAUGUG-----CCGGuUG-UGACCG-CCGGcg -5'
26822 3' -57 NC_005809.1 + 9880 0.67 0.469477
Target:  5'- --cACGCGGCgAGCACgucGGCGaaCUGCu -3'
miRNA:   3'- uuaUGUGCCGgUUGUGa--CCGCc-GGCG- -5'
26822 3' -57 NC_005809.1 + 12485 0.67 0.469477
Target:  5'- --gACAagGGCCGugGCgcccgGGCG-CCGCa -3'
miRNA:   3'- uuaUGUg-CCGGUugUGa----CCGCcGGCG- -5'
26822 3' -57 NC_005809.1 + 24560 0.67 0.469477
Target:  5'- --aGCGCGGCgAugGCgaGGCcGGCCa- -3'
miRNA:   3'- uuaUGUGCCGgUugUGa-CCG-CCGGcg -5'
26822 3' -57 NC_005809.1 + 35687 0.67 0.469477
Target:  5'- uGAUGCGauGCCAGCAgaUGGUGGaCGUg -3'
miRNA:   3'- -UUAUGUgcCGGUUGUg-ACCGCCgGCG- -5'
26822 3' -57 NC_005809.1 + 12565 0.67 0.459286
Target:  5'- -uUGC-CGGCCucGCGCUGcGCGGCg-- -3'
miRNA:   3'- uuAUGuGCCGGu-UGUGAC-CGCCGgcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.