miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 3' -57 NC_005809.1 + 27649 0.67 0.459285
Target:  5'- --cGCGCaGUCGGCACUugaGGCcGGCCaGCa -3'
miRNA:   3'- uuaUGUGcCGGUUGUGA---CCG-CCGG-CG- -5'
26822 3' -57 NC_005809.1 + 8216 0.67 0.459285
Target:  5'- ----gGCGGCCAGuuCgUGcGCGGCCGUg -3'
miRNA:   3'- uuaugUGCCGGUUguG-AC-CGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 6716 0.67 0.449213
Target:  5'- --aACACGGUgAaaagccgcuGCGCUgGGCcGCCGCg -3'
miRNA:   3'- uuaUGUGCCGgU---------UGUGA-CCGcCGGCG- -5'
26822 3' -57 NC_005809.1 + 3863 0.67 0.449213
Target:  5'- uGUAcCAgGcGCCGuCGCUGuaGGCCGCg -3'
miRNA:   3'- uUAU-GUgC-CGGUuGUGACcgCCGGCG- -5'
26822 3' -57 NC_005809.1 + 7667 0.67 0.449213
Target:  5'- cGUACACGcGCCGuucuUUGGCGGCgaucUGCg -3'
miRNA:   3'- uUAUGUGC-CGGUugu-GACCGCCG----GCG- -5'
26822 3' -57 NC_005809.1 + 20812 0.67 0.449212
Target:  5'- cGUGC-CGGgCGGC-CUGuccuauguggacGCGGCCGCg -3'
miRNA:   3'- uUAUGuGCCgGUUGuGAC------------CGCCGGCG- -5'
26822 3' -57 NC_005809.1 + 8168 0.67 0.449212
Target:  5'- --gAUGCGGCCcaggaaGGCGCUGGCGuCCuGCc -3'
miRNA:   3'- uuaUGUGCCGG------UUGUGACCGCcGG-CG- -5'
26822 3' -57 NC_005809.1 + 14904 0.67 0.439263
Target:  5'- -cUGCGCGGCgAucuGCuGCUGGCcGGCCu- -3'
miRNA:   3'- uuAUGUGCCGgU---UG-UGACCG-CCGGcg -5'
26822 3' -57 NC_005809.1 + 40697 0.67 0.439263
Target:  5'- --cACcCGGCCAGCGCcGGCcacgGGCUGa -3'
miRNA:   3'- uuaUGuGCCGGUUGUGaCCG----CCGGCg -5'
26822 3' -57 NC_005809.1 + 14369 0.67 0.439263
Target:  5'- --gGCGUGGCCGAC-CUGGacaagGcGCCGCa -3'
miRNA:   3'- uuaUGUGCCGGUUGuGACCg----C-CGGCG- -5'
26822 3' -57 NC_005809.1 + 37932 0.67 0.429441
Target:  5'- --cGCgAUGGCCGACGCaGcGUGGCCcaGCa -3'
miRNA:   3'- uuaUG-UGCCGGUUGUGaC-CGCCGG--CG- -5'
26822 3' -57 NC_005809.1 + 10714 0.67 0.42944
Target:  5'- -uUGCACGGCgAg----GGCGuGCCGCa -3'
miRNA:   3'- uuAUGUGCCGgUugugaCCGC-CGGCG- -5'
26822 3' -57 NC_005809.1 + 37466 0.68 0.419748
Target:  5'- --gGCGCcaGCCGcaccggACGCUGGgcCGGCCGCc -3'
miRNA:   3'- uuaUGUGc-CGGU------UGUGACC--GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 31520 0.68 0.419748
Target:  5'- -cUGCugGGCCu-CGCUGuGuuGCCGUg -3'
miRNA:   3'- uuAUGugCCGGuuGUGAC-CgcCGGCG- -5'
26822 3' -57 NC_005809.1 + 5565 0.68 0.419748
Target:  5'- cGGUAUcgACGgcGCCAACGCUGGCcGCCa- -3'
miRNA:   3'- -UUAUG--UGC--CGGUUGUGACCGcCGGcg -5'
26822 3' -57 NC_005809.1 + 14849 0.68 0.419748
Target:  5'- cGUugGCGGCCAGCGCcgcacGCuGGgCGCc -3'
miRNA:   3'- uUAugUGCCGGUUGUGac---CG-CCgGCG- -5'
26822 3' -57 NC_005809.1 + 20722 0.68 0.413043
Target:  5'- --gGCACcccaucaGGCCGACaugcuGCUGGCGccguagaggcgcugcGCCGCg -3'
miRNA:   3'- uuaUGUG-------CCGGUUG-----UGACCGC---------------CGGCG- -5'
26822 3' -57 NC_005809.1 + 29573 0.68 0.41019
Target:  5'- -cUGCGCGGCCugUACgagaacGGCGGgCGg -3'
miRNA:   3'- uuAUGUGCCGGuuGUGa-----CCGCCgGCg -5'
26822 3' -57 NC_005809.1 + 6353 0.68 0.41019
Target:  5'- --cGCcCGGCCcgaaggccggGGCGCUGGguuacaccagguCGGCCGCc -3'
miRNA:   3'- uuaUGuGCCGG----------UUGUGACC------------GCCGGCG- -5'
26822 3' -57 NC_005809.1 + 22640 0.68 0.400768
Target:  5'- ---cCACGGCCGACAaggaguucGGCGGCgacaaGCu -3'
miRNA:   3'- uuauGUGCCGGUUGUga------CCGCCGg----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.