miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 5' -60.8 NC_005809.1 + 37784 0.66 0.323289
Target:  5'- -aGCG-CCAGCCgGCgUGCUGgGCg-- -3'
miRNA:   3'- caUGCgGGUCGGgCG-ACGACgCGaua -5'
26822 5' -60.8 NC_005809.1 + 20217 0.66 0.315399
Target:  5'- -aGCGCCCgcGGCCgGCUGUUG-GCc-- -3'
miRNA:   3'- caUGCGGG--UCGGgCGACGACgCGaua -5'
26822 5' -60.8 NC_005809.1 + 39406 0.66 0.307655
Target:  5'- -gACGCCgGGCuuGCcaUGCUGCGa--- -3'
miRNA:   3'- caUGCGGgUCGggCG--ACGACGCgaua -5'
26822 5' -60.8 NC_005809.1 + 28175 0.66 0.306888
Target:  5'- -gACGCCCAGCuUCGCUacgccuacguuccGCgGCGCg-- -3'
miRNA:   3'- caUGCGGGUCG-GGCGA-------------CGaCGCGaua -5'
26822 5' -60.8 NC_005809.1 + 32095 0.66 0.300057
Target:  5'- --cCGUUCGGgCCGgUGCUGCGCg-- -3'
miRNA:   3'- cauGCGGGUCgGGCgACGACGCGaua -5'
26822 5' -60.8 NC_005809.1 + 10943 0.66 0.292605
Target:  5'- gGUAUGCCUugaGGCCCuGCcacGCUGCGUa-- -3'
miRNA:   3'- -CAUGCGGG---UCGGG-CGa--CGACGCGaua -5'
26822 5' -60.8 NC_005809.1 + 1869 0.66 0.285298
Target:  5'- -cAgGUUCAGCCCGUgGCcgGCGCUGg -3'
miRNA:   3'- caUgCGGGUCGGGCGaCGa-CGCGAUa -5'
26822 5' -60.8 NC_005809.1 + 35245 0.67 0.278136
Target:  5'- -gACGCCaa-CCgGCUGCUGCGUUc- -3'
miRNA:   3'- caUGCGGgucGGgCGACGACGCGAua -5'
26822 5' -60.8 NC_005809.1 + 41738 0.67 0.257511
Target:  5'- -cACGgUCGGCUCGCUGUcucUGCGCg-- -3'
miRNA:   3'- caUGCgGGUCGGGCGACG---ACGCGaua -5'
26822 5' -60.8 NC_005809.1 + 12193 0.67 0.257511
Target:  5'- -aACGaaaCCGGCCCGC-GCUGC-CUGc -3'
miRNA:   3'- caUGCg--GGUCGGGCGaCGACGcGAUa -5'
26822 5' -60.8 NC_005809.1 + 15901 0.67 0.257511
Target:  5'- -gAgGCCCAGCagcuugCCGCUGCUGCu---- -3'
miRNA:   3'- caUgCGGGUCG------GGCGACGACGcgaua -5'
26822 5' -60.8 NC_005809.1 + 28521 0.68 0.225936
Target:  5'- -gACGCCCAGCgCCGg-GCUuucGCGCUc- -3'
miRNA:   3'- caUGCGGGUCG-GGCgaCGA---CGCGAua -5'
26822 5' -60.8 NC_005809.1 + 33735 0.68 0.225936
Target:  5'- -aACGCgCUGGCCCGC-GUUGCgGCUGg -3'
miRNA:   3'- caUGCG-GGUCGGGCGaCGACG-CGAUa -5'
26822 5' -60.8 NC_005809.1 + 16833 0.68 0.220028
Target:  5'- -cGCGCCCAGCgUGCUGCcGcCGgUGa -3'
miRNA:   3'- caUGCGGGUCGgGCGACGaC-GCgAUa -5'
26822 5' -60.8 NC_005809.1 + 21159 0.68 0.218282
Target:  5'- -cGCGCCCugguucaacagcgcGGCCUGCUGCgcgGCcuGCUGc -3'
miRNA:   3'- caUGCGGG--------------UCGGGCGACGa--CG--CGAUa -5'
26822 5' -60.8 NC_005809.1 + 24906 0.68 0.214253
Target:  5'- cUACGCCCAGCCCGCcGa--CGCc-- -3'
miRNA:   3'- cAUGCGGGUCGGGCGaCgacGCGaua -5'
26822 5' -60.8 NC_005809.1 + 40653 0.68 0.214253
Target:  5'- ---gGCCCAcCCacaaGCUGCUGCGCa-- -3'
miRNA:   3'- caugCGGGUcGGg---CGACGACGCGaua -5'
26822 5' -60.8 NC_005809.1 + 40066 0.68 0.208609
Target:  5'- -cACGCCCAGCCCGaacggGUUGCa---- -3'
miRNA:   3'- caUGCGGGUCGGGCga---CGACGcgaua -5'
26822 5' -60.8 NC_005809.1 + 11328 0.68 0.208609
Target:  5'- cGU-CGCCCGGCUCGUaGCUGgGCc-- -3'
miRNA:   3'- -CAuGCGGGUCGGGCGaCGACgCGaua -5'
26822 5' -60.8 NC_005809.1 + 11133 0.69 0.203094
Target:  5'- cGUGCGagcaguUCGGCCUGCUGCUGgGCc-- -3'
miRNA:   3'- -CAUGCg-----GGUCGGGCGACGACgCGaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.