miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26822 5' -60.8 NC_005809.1 + 23002 0.75 0.065748
Target:  5'- --uCGCCUggucGGCCUGCUGCUGCGCc-- -3'
miRNA:   3'- cauGCGGG----UCGGGCGACGACGCGaua -5'
26822 5' -60.8 NC_005809.1 + 20217 0.66 0.315399
Target:  5'- -aGCGCCCgcGGCCgGCUGUUG-GCc-- -3'
miRNA:   3'- caUGCGGG--UCGGgCGACGACgCGaua -5'
26822 5' -60.8 NC_005809.1 + 15901 0.67 0.257511
Target:  5'- -gAgGCCCAGCagcuugCCGCUGCUGCu---- -3'
miRNA:   3'- caUgCGGGUCG------GGCGACGACGcgaua -5'
26822 5' -60.8 NC_005809.1 + 12193 0.67 0.257511
Target:  5'- -aACGaaaCCGGCCCGC-GCUGC-CUGc -3'
miRNA:   3'- caUGCg--GGUCGGGCGaCGACGcGAUa -5'
26822 5' -60.8 NC_005809.1 + 41738 0.67 0.257511
Target:  5'- -cACGgUCGGCUCGCUGUcucUGCGCg-- -3'
miRNA:   3'- caUGCgGGUCGGGCGACG---ACGCGaua -5'
26822 5' -60.8 NC_005809.1 + 21159 0.68 0.218282
Target:  5'- -cGCGCCCugguucaacagcgcGGCCUGCUGCgcgGCcuGCUGc -3'
miRNA:   3'- caUGCGGG--------------UCGGGCGACGa--CG--CGAUa -5'
26822 5' -60.8 NC_005809.1 + 40066 0.68 0.208609
Target:  5'- -cACGCCCAGCCCGaacggGUUGCa---- -3'
miRNA:   3'- caUGCGGGUCGGGCga---CGACGcgaua -5'
26822 5' -60.8 NC_005809.1 + 11133 0.69 0.203094
Target:  5'- cGUGCGagcaguUCGGCCUGCUGCUGgGCc-- -3'
miRNA:   3'- -CAUGCg-----GGUCGGGCGACGACgCGaua -5'
26822 5' -60.8 NC_005809.1 + 12626 0.69 0.197705
Target:  5'- -cGCGCUCGGCaUCGCUGCUGCcGUc-- -3'
miRNA:   3'- caUGCGGGUCG-GGCGACGACG-CGaua -5'
26822 5' -60.8 NC_005809.1 + 36933 0.69 0.177383
Target:  5'- -cGCGUCCAGCCaccaGCaaGCUGCGCc-- -3'
miRNA:   3'- caUGCGGGUCGGg---CGa-CGACGCGaua -5'
26822 5' -60.8 NC_005809.1 + 4789 0.75 0.069686
Target:  5'- cUGCGCCCAGCaCGCcgGCUgGCGCUGc -3'
miRNA:   3'- cAUGCGGGUCGgGCGa-CGA-CGCGAUa -5'
26822 5' -60.8 NC_005809.1 + 24149 0.73 0.101362
Target:  5'- -cGCGCCUGGCCCaGCgccucgacgGCUGCGCg-- -3'
miRNA:   3'- caUGCGGGUCGGG-CGa--------CGACGCGaua -5'
26822 5' -60.8 NC_005809.1 + 14698 0.72 0.116845
Target:  5'- ---aGCCCGGCCUGCaGUUGCGCc-- -3'
miRNA:   3'- caugCGGGUCGGGCGaCGACGCGaua -5'
26822 5' -60.8 NC_005809.1 + 12722 0.72 0.120196
Target:  5'- aGU-CGCCCGGCCCGUuggUGCUGgGUg-- -3'
miRNA:   3'- -CAuGCGGGUCGGGCG---ACGACgCGaua -5'
26822 5' -60.8 NC_005809.1 + 27435 0.71 0.134511
Target:  5'- -cGCGCCCGGCggCCGCagGCccugGCGCUGg -3'
miRNA:   3'- caUGCGGGUCG--GGCGa-CGa---CGCGAUa -5'
26822 5' -60.8 NC_005809.1 + 25753 0.71 0.138328
Target:  5'- -cACGCUgGGCgCGCUGCUGgGCg-- -3'
miRNA:   3'- caUGCGGgUCGgGCGACGACgCGaua -5'
26822 5' -60.8 NC_005809.1 + 37784 0.66 0.323289
Target:  5'- -aGCG-CCAGCCgGCgUGCUGgGCg-- -3'
miRNA:   3'- caUGCgGGUCGGgCG-ACGACgCGaua -5'
26822 5' -60.8 NC_005809.1 + 6351 0.77 0.047648
Target:  5'- -aGCGCCCGGCCCGaagGCcgggGCGCUGg -3'
miRNA:   3'- caUGCGGGUCGGGCga-CGa---CGCGAUa -5'
26822 5' -60.8 NC_005809.1 + 18829 0.7 0.158939
Target:  5'- -gGCG-CCGGCauggCGCUGCUGCGCg-- -3'
miRNA:   3'- caUGCgGGUCGg---GCGACGACGCGaua -5'
26822 5' -60.8 NC_005809.1 + 29282 0.7 0.167934
Target:  5'- -gGC-CCCGGCgCGCUGCaaucgGCGCUGa -3'
miRNA:   3'- caUGcGGGUCGgGCGACGa----CGCGAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.