Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26822 | 5' | -60.8 | NC_005809.1 | + | 27719 | 0.69 | 0.187301 |
Target: 5'- -gGCGCCCAGCgUGCg---GCGCUGg -3' miRNA: 3'- caUGCGGGUCGgGCGacgaCGCGAUa -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 32095 | 0.66 | 0.300057 |
Target: 5'- --cCGUUCGGgCCGgUGCUGCGCg-- -3' miRNA: 3'- cauGCGGGUCgGGCgACGACGCGaua -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 28175 | 0.66 | 0.306888 |
Target: 5'- -gACGCCCAGCuUCGCUacgccuacguuccGCgGCGCg-- -3' miRNA: 3'- caUGCGGGUCG-GGCGA-------------CGaCGCGaua -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 37784 | 0.66 | 0.323289 |
Target: 5'- -aGCG-CCAGCCgGCgUGCUGgGCg-- -3' miRNA: 3'- caUGCgGGUCGGgCG-ACGACgCGaua -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 40653 | 0.68 | 0.214253 |
Target: 5'- ---gGCCCAcCCacaaGCUGCUGCGCa-- -3' miRNA: 3'- caugCGGGUcGGg---CGACGACGCGaua -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 39011 | 1.04 | 0.000328 |
Target: 5'- uGUACGCCCAGCCCGCUGCUGCGCUAUu -3' miRNA: 3'- -CAUGCGGGUCGGGCGACGACGCGAUA- -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 6351 | 0.77 | 0.047648 |
Target: 5'- -aGCGCCCGGCCCGaagGCcgggGCGCUGg -3' miRNA: 3'- caUGCGGGUCGGGCga-CGa---CGCGAUa -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 18829 | 0.7 | 0.158939 |
Target: 5'- -gGCG-CCGGCauggCGCUGCUGCGCg-- -3' miRNA: 3'- caUGCgGGUCGg---GCGACGACGCGaua -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 29282 | 0.7 | 0.167934 |
Target: 5'- -gGC-CCCGGCgCGCUGCaaucgGCGCUGa -3' miRNA: 3'- caUGcGGGUCGgGCGACGa----CGCGAUa -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 35245 | 0.67 | 0.278136 |
Target: 5'- -gACGCCaa-CCgGCUGCUGCGUUc- -3' miRNA: 3'- caUGCGGgucGGgCGACGACGCGAua -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 33735 | 0.68 | 0.225936 |
Target: 5'- -aACGCgCUGGCCCGC-GUUGCgGCUGg -3' miRNA: 3'- caUGCG-GGUCGGGCGaCGACG-CGAUa -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 9558 | 0.69 | 0.197705 |
Target: 5'- --cCGCCCAGCaUCGUgaUGCUGuCGCUGg -3' miRNA: 3'- cauGCGGGUCG-GGCG--ACGAC-GCGAUa -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 1869 | 0.66 | 0.285298 |
Target: 5'- -cAgGUUCAGCCCGUgGCcgGCGCUGg -3' miRNA: 3'- caUgCGGGUCGGGCGaCGa-CGCGAUa -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 11328 | 0.68 | 0.208609 |
Target: 5'- cGU-CGCCCGGCUCGUaGCUGgGCc-- -3' miRNA: 3'- -CAuGCGGGUCGGGCGaCGACgCGaua -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 28521 | 0.68 | 0.225936 |
Target: 5'- -gACGCCCAGCgCCGg-GCUuucGCGCUc- -3' miRNA: 3'- caUGCGGGUCG-GGCgaCGA---CGCGAua -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 10943 | 0.66 | 0.292605 |
Target: 5'- gGUAUGCCUugaGGCCCuGCcacGCUGCGUa-- -3' miRNA: 3'- -CAUGCGGG---UCGGG-CGa--CGACGCGaua -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 39406 | 0.66 | 0.307655 |
Target: 5'- -gACGCCgGGCuuGCcaUGCUGCGa--- -3' miRNA: 3'- caUGCGGgUCGggCG--ACGACGCgaua -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 24906 | 0.68 | 0.214253 |
Target: 5'- cUACGCCCAGCCCGCcGa--CGCc-- -3' miRNA: 3'- cAUGCGGGUCGGGCGaCgacGCGaua -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 16833 | 0.68 | 0.220028 |
Target: 5'- -cGCGCCCAGCgUGCUGCcGcCGgUGa -3' miRNA: 3'- caUGCGGGUCGgGCGACGaC-GCgAUa -5' |
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26822 | 5' | -60.8 | NC_005809.1 | + | 40339 | 0.69 | 0.182283 |
Target: 5'- -cGCGgCCAcGCgCCGcCUGCUGCGCg-- -3' miRNA: 3'- caUGCgGGU-CG-GGC-GACGACGCGaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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