miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26824 3' -56.4 NC_005809.1 + 19953 0.67 0.566294
Target:  5'- ---uGCCaCGGCCAagaaGGCGCGCGAc- -3'
miRNA:   3'- gaugUGGaGCUGGUg---CCGCGCGUUcc -5'
26824 3' -56.4 NC_005809.1 + 13749 0.67 0.566294
Target:  5'- -gACGCCgaCGACauccuCACGGUGCGCGgucauaucaccaAGGa -3'
miRNA:   3'- gaUGUGGa-GCUG-----GUGCCGCGCGU------------UCC- -5'
26824 3' -56.4 NC_005809.1 + 25787 0.67 0.555458
Target:  5'- ---gGCCgCGAUgcgCGCGGCGCGCucGGu -3'
miRNA:   3'- gaugUGGaGCUG---GUGCCGCGCGuuCC- -5'
26824 3' -56.4 NC_005809.1 + 16696 0.67 0.555458
Target:  5'- -aGgGCCgUGACCACGuaGCGguAGGu -3'
miRNA:   3'- gaUgUGGaGCUGGUGCcgCGCguUCC- -5'
26824 3' -56.4 NC_005809.1 + 15007 0.67 0.555457
Target:  5'- -aGCAUCgcCGAgUugGGCGCGCAGucGGc -3'
miRNA:   3'- gaUGUGGa-GCUgGugCCGCGCGUU--CC- -5'
26824 3' -56.4 NC_005809.1 + 4669 0.67 0.555457
Target:  5'- aUugGCCUggcUGACCugGGCGgcauCGCAuaacuAGGa -3'
miRNA:   3'- gAugUGGA---GCUGGugCCGC----GCGU-----UCC- -5'
26824 3' -56.4 NC_005809.1 + 32932 0.67 0.544683
Target:  5'- gCUGCugUUCGGCCAgGGCGaC-CAcGGc -3'
miRNA:   3'- -GAUGugGAGCUGGUgCCGC-GcGUuCC- -5'
26824 3' -56.4 NC_005809.1 + 25649 0.67 0.544682
Target:  5'- cCUGgGCCgcaGACCGCGGCGUaCAAc- -3'
miRNA:   3'- -GAUgUGGag-CUGGUGCCGCGcGUUcc -5'
26824 3' -56.4 NC_005809.1 + 13072 0.67 0.544682
Target:  5'- aCUGCGCUgcgCGGCCuguacgagaACGGCGgGCGGu- -3'
miRNA:   3'- -GAUGUGGa--GCUGG---------UGCCGCgCGUUcc -5'
26824 3' -56.4 NC_005809.1 + 23555 0.67 0.542535
Target:  5'- ---gGCCUCGGCCGacaucgccggcaGGUGCggGCGGGGg -3'
miRNA:   3'- gaugUGGAGCUGGUg-----------CCGCG--CGUUCC- -5'
26824 3' -56.4 NC_005809.1 + 1307 0.67 0.533976
Target:  5'- -cGCGCCcagggcgaCGGCCACcaGGCcgacaaGCGCGAGGa -3'
miRNA:   3'- gaUGUGGa-------GCUGGUG--CCG------CGCGUUCC- -5'
26824 3' -56.4 NC_005809.1 + 685 0.67 0.533975
Target:  5'- -gACGCCgUGuCCACGGCGCuGCu-GGc -3'
miRNA:   3'- gaUGUGGaGCuGGUGCCGCG-CGuuCC- -5'
26824 3' -56.4 NC_005809.1 + 20181 0.67 0.533975
Target:  5'- -gGCA-UUCGACgACGGUGUGCuGGGc -3'
miRNA:   3'- gaUGUgGAGCUGgUGCCGCGCGuUCC- -5'
26824 3' -56.4 NC_005809.1 + 22431 0.67 0.530778
Target:  5'- -cACGCCUUGACgGCGGCGgacuCGUccaguucgggaaucGAGGu -3'
miRNA:   3'- gaUGUGGAGCUGgUGCCGC----GCG--------------UUCC- -5'
26824 3' -56.4 NC_005809.1 + 26263 0.67 0.530778
Target:  5'- -gGCACCcgcCGGCCugGucggcucgcgcaucGCGCGCGAuGGa -3'
miRNA:   3'- gaUGUGGa--GCUGGugC--------------CGCGCGUU-CC- -5'
26824 3' -56.4 NC_005809.1 + 29618 0.67 0.527587
Target:  5'- -gAUACCcCGAgCACGGCGUGgguguccucugcggcCAGGGg -3'
miRNA:   3'- gaUGUGGaGCUgGUGCCGCGC---------------GUUCC- -5'
26824 3' -56.4 NC_005809.1 + 489 0.67 0.523345
Target:  5'- -gAUGCCUCGgcagcauacugcGCCGCGGCGgcuUGCAGGcGg -3'
miRNA:   3'- gaUGUGGAGC------------UGGUGCCGC---GCGUUC-C- -5'
26824 3' -56.4 NC_005809.1 + 34761 0.67 0.523345
Target:  5'- -cGCGCCUCGACCAUaucaGCGaguGGGa -3'
miRNA:   3'- gaUGUGGAGCUGGUGccg-CGCgu-UCC- -5'
26824 3' -56.4 NC_005809.1 + 8316 0.67 0.512796
Target:  5'- -aACACCUgGGCCGCuugaaGCGCAAGc -3'
miRNA:   3'- gaUGUGGAgCUGGUGccg--CGCGUUCc -5'
26824 3' -56.4 NC_005809.1 + 28347 0.67 0.508601
Target:  5'- uCUGCGCCgugucccagcgcgCGGUCAUGGUGCGCAAcauGGu -3'
miRNA:   3'- -GAUGUGGa------------GCUGGUGCCGCGCGUU---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.