Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26825 | 3' | -57.1 | NC_005809.1 | + | 38189 | 1.12 | 0.000325 |
Target: 5'- aUCAAGGCCGACAAGUCGGCCGUCGCCu -3' miRNA: 3'- -AGUUCCGGCUGUUCAGCCGGCAGCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 35321 | 0.8 | 0.073889 |
Target: 5'- aCAAGGCCGGCGAcaUCGGCCcG-CGCCa -3' miRNA: 3'- aGUUCCGGCUGUUc-AGCCGG-CaGCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 29566 | 0.78 | 0.092875 |
Target: 5'- cUCGGGGUaucgCGuCAGGUCGGCCG-CGCCc -3' miRNA: 3'- -AGUUCCG----GCuGUUCAGCCGGCaGCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 24572 | 0.78 | 0.092875 |
Target: 5'- gCGAGGCCGGCcacGGUCgGGCCGUCcggcguguccuuGCCg -3' miRNA: 3'- aGUUCCGGCUGu--UCAG-CCGGCAG------------CGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 6363 | 0.78 | 0.102275 |
Target: 5'- -gAAGGCCGGggcgcuggguuacacCAGGUCGGCCGcCGCg -3' miRNA: 3'- agUUCCGGCU---------------GUUCAGCCGGCaGCGg -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 31602 | 0.77 | 0.122101 |
Target: 5'- ---uGGCCGaACAGGUggccgcagugucccCGGCUGUCGCCg -3' miRNA: 3'- aguuCCGGC-UGUUCA--------------GCCGGCAGCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 19020 | 0.77 | 0.126614 |
Target: 5'- ----uGCCGGCGAuGUCGGCCGagGCCa -3' miRNA: 3'- aguucCGGCUGUU-CAGCCGGCagCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 8784 | 0.77 | 0.126614 |
Target: 5'- aCGcGGCgcaCGAUggGUCGGCCG-CGCCg -3' miRNA: 3'- aGUuCCG---GCUGuuCAGCCGGCaGCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 5140 | 0.76 | 0.133861 |
Target: 5'- gCAAcGuGCCGcGCAGG-CGGCCGUCGCUg -3' miRNA: 3'- aGUU-C-CGGC-UGUUCaGCCGGCAGCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 35727 | 0.76 | 0.137626 |
Target: 5'- -gGGGGCCuACGAaaaGGCCGUCGCCg -3' miRNA: 3'- agUUCCGGcUGUUcagCCGGCAGCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 24094 | 0.76 | 0.137626 |
Target: 5'- aUCAcGGUgGACGAaUCGGCCGaCGCCg -3' miRNA: 3'- -AGUuCCGgCUGUUcAGCCGGCaGCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 28883 | 0.75 | 0.157944 |
Target: 5'- cUCGcuGCUGGCGuAGUugcUGGCCGUCGCCg -3' miRNA: 3'- -AGUucCGGCUGU-UCA---GCCGGCAGCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 41751 | 0.75 | 0.166353 |
Target: 5'- aCcuGGCCGACGuucggcaagggcuGGgcgCGGCgCGUCGCCg -3' miRNA: 3'- aGuuCCGGCUGU-------------UCa--GCCG-GCAGCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 13308 | 0.75 | 0.170012 |
Target: 5'- cCGGGGCCGGCGuuguaggcggcguaGGcuuUCGGCagGUCGCCg -3' miRNA: 3'- aGUUCCGGCUGU--------------UC---AGCCGg-CAGCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 601 | 0.74 | 0.180935 |
Target: 5'- ---uGGCCGccuGCGGGUCGGCCagcagCGCCg -3' miRNA: 3'- aguuCCGGC---UGUUCAGCCGGca---GCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 34931 | 0.74 | 0.190934 |
Target: 5'- gCAAGgaGCCGGCGugGGUCGaGCCG-CGCCc -3' miRNA: 3'- aGUUC--CGGCUGU--UCAGC-CGGCaGCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 2593 | 0.74 | 0.190934 |
Target: 5'- gCAAGGCCaGCAGGUUGGCgagGUCGUa -3' miRNA: 3'- aGUUCCGGcUGUUCAGCCGg--CAGCGg -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 13591 | 0.73 | 0.212393 |
Target: 5'- aCGAGGacuaCGACAccuggcugaaAGUCGGCaUGUCGCUg -3' miRNA: 3'- aGUUCCg---GCUGU----------UCAGCCG-GCAGCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 34151 | 0.73 | 0.212393 |
Target: 5'- cUCAAGGCCguaGACAAGcgcaCGGCCcUgGCCg -3' miRNA: 3'- -AGUUCCGG---CUGUUCa---GCCGGcAgCGG- -5' |
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26825 | 3' | -57.1 | NC_005809.1 | + | 32324 | 0.73 | 0.21465 |
Target: 5'- aUCAAGGCCGGCgucccgacaaccgccGcccaGGUCGcuGCgGUCGCCg -3' miRNA: 3'- -AGUUCCGGCUG---------------U----UCAGC--CGgCAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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