miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26825 3' -57.1 NC_005809.1 + 18337 0.73 0.223882
Target:  5'- gCGAGGacaucaUCGAgAAGaUCGGCCGcUCGCCg -3'
miRNA:   3'- aGUUCC------GGCUgUUC-AGCCGGC-AGCGG- -5'
26825 3' -57.1 NC_005809.1 + 18463 0.73 0.229821
Target:  5'- gUCGcGGcGCCGGCGGcGUCGGCCGauUCGUCc -3'
miRNA:   3'- -AGU-UC-CGGCUGUU-CAGCCGGC--AGCGG- -5'
26825 3' -57.1 NC_005809.1 + 19383 0.73 0.229821
Target:  5'- aCGAGGCCGACcuG-CuGCUGUCGCa -3'
miRNA:   3'- aGUUCCGGCUGuuCaGcCGGCAGCGg -5'
26825 3' -57.1 NC_005809.1 + 37681 0.73 0.235894
Target:  5'- cCGuGGCCGAaaaCGAGgccGCCGUCGCCg -3'
miRNA:   3'- aGUuCCGGCU---GUUCagcCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 8850 0.72 0.261536
Target:  5'- --cGGGCCaGCGcGUUGGCCucgGUCGCCa -3'
miRNA:   3'- aguUCCGGcUGUuCAGCCGG---CAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 14024 0.72 0.26761
Target:  5'- gCGAuGGCCGGCGgccgcaaGGUCGuGCCGUucaacaagcagCGCCg -3'
miRNA:   3'- aGUU-CCGGCUGU-------UCAGC-CGGCA-----------GCGG- -5'
26825 3' -57.1 NC_005809.1 + 5251 0.72 0.268292
Target:  5'- ---cGGCCGGCAGGUCGGg-GUCGgCa -3'
miRNA:   3'- aguuCCGGCUGUUCAGCCggCAGCgG- -5'
26825 3' -57.1 NC_005809.1 + 41839 0.71 0.275187
Target:  5'- aCcuGGCCGGCGuuGUCGGCaaaGcCGCCc -3'
miRNA:   3'- aGuuCCGGCUGUu-CAGCCGg--CaGCGG- -5'
26825 3' -57.1 NC_005809.1 + 28448 0.71 0.282224
Target:  5'- gUCGAuuuCCGGCAcGUacaugaGGCCGUCGCCg -3'
miRNA:   3'- -AGUUcc-GGCUGUuCAg-----CCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 39810 0.71 0.296723
Target:  5'- gUCGAGGUguCGGCAguGGUCGGCaCGcccgagcagCGCCg -3'
miRNA:   3'- -AGUUCCG--GCUGU--UCAGCCG-GCa--------GCGG- -5'
26825 3' -57.1 NC_005809.1 + 30020 0.71 0.296724
Target:  5'- gCGAGGCCGGCAAGaaauUCa-CCGaCGCCg -3'
miRNA:   3'- aGUUCCGGCUGUUC----AGccGGCaGCGG- -5'
26825 3' -57.1 NC_005809.1 + 4383 0.71 0.304188
Target:  5'- gCGAcGGCCGACuuGUCGGCCuugaugaaaGCCg -3'
miRNA:   3'- aGUU-CCGGCUGuuCAGCCGGcag------CGG- -5'
26825 3' -57.1 NC_005809.1 + 1324 0.71 0.304188
Target:  5'- cCAccAGGCCGACAAGcgCGaggaaGCCGUgGUCg -3'
miRNA:   3'- aGU--UCCGGCUGUUCa-GC-----CGGCAgCGG- -5'
26825 3' -57.1 NC_005809.1 + 4824 0.7 0.327441
Target:  5'- gUCGGGGCCGGC------GCCGUCGUCg -3'
miRNA:   3'- -AGUUCCGGCUGuucagcCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 10505 0.7 0.327441
Target:  5'- gCGGGGCCGAUGAGcaUGGC-GUCGCa -3'
miRNA:   3'- aGUUCCGGCUGUUCa-GCCGgCAGCGg -5'
26825 3' -57.1 NC_005809.1 + 3592 0.7 0.327441
Target:  5'- cCGcGGCCGcCAGuGUUGGCCGUguauucggaugCGCCa -3'
miRNA:   3'- aGUuCCGGCuGUU-CAGCCGGCA-----------GCGG- -5'
26825 3' -57.1 NC_005809.1 + 20257 0.7 0.327441
Target:  5'- --uGGGUCGGCuguugcugcuGUUGGCCGUCGUUg -3'
miRNA:   3'- aguUCCGGCUGuu--------CAGCCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 4090 0.7 0.335479
Target:  5'- aUC-AGGCCGGcCAGGUgGGCgG-CGCUg -3'
miRNA:   3'- -AGuUCCGGCU-GUUCAgCCGgCaGCGG- -5'
26825 3' -57.1 NC_005809.1 + 29130 0.7 0.335479
Target:  5'- cCGAGGCCGcCAAGcUGGCgGgccUGCCg -3'
miRNA:   3'- aGUUCCGGCuGUUCaGCCGgCa--GCGG- -5'
26825 3' -57.1 NC_005809.1 + 9465 0.7 0.34366
Target:  5'- uUCAGGGCCuuggguucaugGGCGAGgauguaGGCCGcCGCg -3'
miRNA:   3'- -AGUUCCGG-----------CUGUUCag----CCGGCaGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.