miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26825 3' -57.1 NC_005809.1 + 5251 0.72 0.268292
Target:  5'- ---cGGCCGGCAGGUCGGg-GUCGgCa -3'
miRNA:   3'- aguuCCGGCUGUUCAGCCggCAGCgG- -5'
26825 3' -57.1 NC_005809.1 + 6363 0.78 0.102275
Target:  5'- -gAAGGCCGGggcgcuggguuacacCAGGUCGGCCGcCGCg -3'
miRNA:   3'- agUUCCGGCU---------------GUUCAGCCGGCaGCGg -5'
26825 3' -57.1 NC_005809.1 + 6661 0.68 0.462489
Target:  5'- cCGGGgaaGCCGuCGuAGUUGGCCuugagGUCGCCa -3'
miRNA:   3'- aGUUC---CGGCuGU-UCAGCCGG-----CAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 8784 0.77 0.126614
Target:  5'- aCGcGGCgcaCGAUggGUCGGCCG-CGCCg -3'
miRNA:   3'- aGUuCCG---GCUGuuCAGCCGGCaGCGG- -5'
26825 3' -57.1 NC_005809.1 + 8814 0.67 0.490815
Target:  5'- gUCGAGGCgGuACuugguGUCGGCCuugauaccguccUCGCCg -3'
miRNA:   3'- -AGUUCCGgC-UGuu---CAGCCGGc-----------AGCGG- -5'
26825 3' -57.1 NC_005809.1 + 8850 0.72 0.261536
Target:  5'- --cGGGCCaGCGcGUUGGCCucgGUCGCCa -3'
miRNA:   3'- aguUCCGGcUGUuCAGCCGG---CAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 9098 0.67 0.513625
Target:  5'- gCGAGGCCGuucuuGCcGGUgGGCagguaUCGCCa -3'
miRNA:   3'- aGUUCCGGC-----UGuUCAgCCGgc---AGCGG- -5'
26825 3' -57.1 NC_005809.1 + 9465 0.7 0.34366
Target:  5'- uUCAGGGCCuuggguucaugGGCGAGgauguaGGCCGcCGCg -3'
miRNA:   3'- -AGUUCCGG-----------CUGUUCag----CCGGCaGCGg -5'
26825 3' -57.1 NC_005809.1 + 10459 0.67 0.524136
Target:  5'- gUCGAGGUCGGCAg--CGGCCagggCGUUg -3'
miRNA:   3'- -AGUUCCGGCUGUucaGCCGGca--GCGG- -5'
26825 3' -57.1 NC_005809.1 + 10505 0.7 0.327441
Target:  5'- gCGGGGCCGAUGAGcaUGGC-GUCGCa -3'
miRNA:   3'- aGUUCCGGCUGUUCa-GCCGgCAGCGg -5'
26825 3' -57.1 NC_005809.1 + 11157 0.67 0.502163
Target:  5'- --uGGGCCGccugcGCAcguugcgugcgcuGGUCGGCCGUgGUg -3'
miRNA:   3'- aguUCCGGC-----UGU-------------UCAGCCGGCAgCGg -5'
26825 3' -57.1 NC_005809.1 + 11407 0.69 0.395711
Target:  5'- cCAGGGUcuugagcagCGGCGAGcCGGCgugcagGUCGCCg -3'
miRNA:   3'- aGUUCCG---------GCUGUUCaGCCGg-----CAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 12012 0.7 0.36045
Target:  5'- ---cGGCCaGCAGcgCGGCCGUgGCCg -3'
miRNA:   3'- aguuCCGGcUGUUcaGCCGGCAgCGG- -5'
26825 3' -57.1 NC_005809.1 + 12118 0.67 0.49287
Target:  5'- uUCAA--UCGGCAGGUUGGCgCGacgCGCCa -3'
miRNA:   3'- -AGUUccGGCUGUUCAGCCG-GCa--GCGG- -5'
26825 3' -57.1 NC_005809.1 + 12446 0.68 0.442791
Target:  5'- --cAGGCCGGCGgcguguucuGGcgCGGCCucaUCGCCu -3'
miRNA:   3'- aguUCCGGCUGU---------UCa-GCCGGc--AGCGG- -5'
26825 3' -57.1 NC_005809.1 + 13160 0.7 0.343661
Target:  5'- cUCGAuGUCGGCcaguGUCGGCCG-CGCUg -3'
miRNA:   3'- -AGUUcCGGCUGuu--CAGCCGGCaGCGG- -5'
26825 3' -57.1 NC_005809.1 + 13308 0.75 0.170012
Target:  5'- cCGGGGCCGGCGuuguaggcggcguaGGcuuUCGGCagGUCGCCg -3'
miRNA:   3'- aGUUCCGGCUGU--------------UC---AGCCGg-CAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 13591 0.73 0.212393
Target:  5'- aCGAGGacuaCGACAccuggcugaaAGUCGGCaUGUCGCUg -3'
miRNA:   3'- aGUUCCg---GCUGU----------UCAGCCG-GCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 14024 0.72 0.26761
Target:  5'- gCGAuGGCCGGCGgccgcaaGGUCGuGCCGUucaacaagcagCGCCg -3'
miRNA:   3'- aGUU-CCGGCUGU-------UCAGC-CGGCA-----------GCGG- -5'
26825 3' -57.1 NC_005809.1 + 14247 0.69 0.404867
Target:  5'- cCAAGGCCauCGAGUCcgacGCCGagcgCGCCg -3'
miRNA:   3'- aGUUCCGGcuGUUCAGc---CGGCa---GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.