miRNA display CGI


Results 1 - 20 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26825 3' -57.1 NC_005809.1 + 41852 0.68 0.442791
Target:  5'- cCAGGcGCuCGAC---UUGGCCGUgGCCg -3'
miRNA:   3'- aGUUC-CG-GCUGuucAGCCGGCAgCGG- -5'
26825 3' -57.1 NC_005809.1 + 41839 0.71 0.275187
Target:  5'- aCcuGGCCGGCGuuGUCGGCaaaGcCGCCc -3'
miRNA:   3'- aGuuCCGGCUGUu-CAGCCGg--CaGCGG- -5'
26825 3' -57.1 NC_005809.1 + 41751 0.75 0.166353
Target:  5'- aCcuGGCCGACGuucggcaagggcuGGgcgCGGCgCGUCGCCg -3'
miRNA:   3'- aGuuCCGGCUGU-------------UCa--GCCG-GCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 41229 0.7 0.351146
Target:  5'- gCAAGGCCGccgaccACGGcuuccucgcgcuuGUCggccugguGGCCGUCGCCc -3'
miRNA:   3'- aGUUCCGGC------UGUU-------------CAG--------CCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 40148 0.68 0.423575
Target:  5'- uUCGAGGCCGGCcuG-CuGCCGUacaccuacgcuUGCCg -3'
miRNA:   3'- -AGUUCCGGCUGuuCaGcCGGCA-----------GCGG- -5'
26825 3' -57.1 NC_005809.1 + 39810 0.71 0.296723
Target:  5'- gUCGAGGUguCGGCAguGGUCGGCaCGcccgagcagCGCCg -3'
miRNA:   3'- -AGUUCCG--GCUGU--UCAGCCG-GCa--------GCGG- -5'
26825 3' -57.1 NC_005809.1 + 38189 1.12 0.000325
Target:  5'- aUCAAGGCCGACAAGUCGGCCGUCGCCu -3'
miRNA:   3'- -AGUUCCGGCUGUUCAGCCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 37681 0.73 0.235894
Target:  5'- cCGuGGCCGAaaaCGAGgccGCCGUCGCCg -3'
miRNA:   3'- aGUuCCGGCU---GUUCagcCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 37650 0.68 0.462489
Target:  5'- cCGAGGgCaAgAAGcUGGUCGUCGCCg -3'
miRNA:   3'- aGUUCCgGcUgUUCaGCCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 37216 0.69 0.395711
Target:  5'- ----uGUCGAgCAuGUUGGCUGUCGCCa -3'
miRNA:   3'- aguucCGGCU-GUuCAGCCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 36982 0.67 0.512578
Target:  5'- aCGAGGCgGACAucgacacGGUggCGGCCagcguuggCGCCg -3'
miRNA:   3'- aGUUCCGgCUGU-------UCA--GCCGGca------GCGG- -5'
26825 3' -57.1 NC_005809.1 + 36895 0.67 0.48162
Target:  5'- aCAAGGCCGGCAAGcagcuaaUCauGCUGuUCGCa -3'
miRNA:   3'- aGUUCCGGCUGUUC-------AGc-CGGC-AGCGg -5'
26825 3' -57.1 NC_005809.1 + 36212 0.66 0.588663
Target:  5'- ----uGCCGAC--GUgGGCCGguUCGCCa -3'
miRNA:   3'- aguucCGGCUGuuCAgCCGGC--AGCGG- -5'
26825 3' -57.1 NC_005809.1 + 36169 0.67 0.482638
Target:  5'- aCAuGGGCCGcgacuACAccgGGcCGGCCGgccugCGCCu -3'
miRNA:   3'- aGU-UCCGGC-----UGU---UCaGCCGGCa----GCGG- -5'
26825 3' -57.1 NC_005809.1 + 35727 0.76 0.137626
Target:  5'- -gGGGGCCuACGAaaaGGCCGUCGCCg -3'
miRNA:   3'- agUUCCGGcUGUUcagCCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 35321 0.8 0.073889
Target:  5'- aCAAGGCCGGCGAcaUCGGCCcG-CGCCa -3'
miRNA:   3'- aGUUCCGGCUGUUc-AGCCGG-CaGCGG- -5'
26825 3' -57.1 NC_005809.1 + 35306 0.69 0.384009
Target:  5'- cCGAGGCCaagcagcaguucaaGACcuGggCGGCCGacaUCGCCg -3'
miRNA:   3'- aGUUCCGG--------------CUGuuCa-GCCGGC---AGCGG- -5'
26825 3' -57.1 NC_005809.1 + 34931 0.74 0.190934
Target:  5'- gCAAGgaGCCGGCGugGGUCGaGCCG-CGCCc -3'
miRNA:   3'- aGUUC--CGGCUGU--UCAGC-CGGCaGCGG- -5'
26825 3' -57.1 NC_005809.1 + 34623 0.68 0.451597
Target:  5'- cCGAGGCCacgGGCAAGcugucggaaauccUCGcGCCGguguUCGCCc -3'
miRNA:   3'- aGUUCCGG---CUGUUC-------------AGC-CGGC----AGCGG- -5'
26825 3' -57.1 NC_005809.1 + 34345 0.69 0.369058
Target:  5'- ----cGCCGACGAGggcaCGGCCG-CGCa -3'
miRNA:   3'- aguucCGGCUGUUCa---GCCGGCaGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.