miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26825 3' -57.1 NC_005809.1 + 38189 1.12 0.000325
Target:  5'- aUCAAGGCCGACAAGUCGGCCGUCGCCu -3'
miRNA:   3'- -AGUUCCGGCUGUUCAGCCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 30020 0.71 0.296724
Target:  5'- gCGAGGCCGGCAAGaaauUCa-CCGaCGCCg -3'
miRNA:   3'- aGUUCCGGCUGUUC----AGccGGCaGCGG- -5'
26825 3' -57.1 NC_005809.1 + 10505 0.7 0.327441
Target:  5'- gCGGGGCCGAUGAGcaUGGC-GUCGCa -3'
miRNA:   3'- aGUUCCGGCUGUUCa-GCCGgCAGCGg -5'
26825 3' -57.1 NC_005809.1 + 36212 0.66 0.588663
Target:  5'- ----uGCCGAC--GUgGGCCGguUCGCCa -3'
miRNA:   3'- aguucCGGCUGuuCAgCCGGC--AGCGG- -5'
26825 3' -57.1 NC_005809.1 + 5140 0.76 0.133861
Target:  5'- gCAAcGuGCCGcGCAGG-CGGCCGUCGCUg -3'
miRNA:   3'- aGUU-C-CGGC-UGUUCaGCCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 35727 0.76 0.137626
Target:  5'- -gGGGGCCuACGAaaaGGCCGUCGCCg -3'
miRNA:   3'- agUUCCGGcUGUUcagCCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 41751 0.75 0.166353
Target:  5'- aCcuGGCCGACGuucggcaagggcuGGgcgCGGCgCGUCGCCg -3'
miRNA:   3'- aGuuCCGGCUGU-------------UCa--GCCG-GCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 34931 0.74 0.190934
Target:  5'- gCAAGgaGCCGGCGugGGUCGaGCCG-CGCCc -3'
miRNA:   3'- aGUUC--CGGCUGU--UCAGC-CGGCaGCGG- -5'
26825 3' -57.1 NC_005809.1 + 18337 0.73 0.223882
Target:  5'- gCGAGGacaucaUCGAgAAGaUCGGCCGcUCGCCg -3'
miRNA:   3'- aGUUCC------GGCUgUUC-AGCCGGC-AGCGG- -5'
26825 3' -57.1 NC_005809.1 + 41839 0.71 0.275187
Target:  5'- aCcuGGCCGGCGuuGUCGGCaaaGcCGCCc -3'
miRNA:   3'- aGuuCCGGCUGUu-CAGCCGg--CaGCGG- -5'
26825 3' -57.1 NC_005809.1 + 37681 0.73 0.235894
Target:  5'- cCGuGGCCGAaaaCGAGgccGCCGUCGCCg -3'
miRNA:   3'- aGUuCCGGCU---GUUCagcCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 34151 0.73 0.212393
Target:  5'- cUCAAGGCCguaGACAAGcgcaCGGCCcUgGCCg -3'
miRNA:   3'- -AGUUCCGG---CUGUUCa---GCCGGcAgCGG- -5'
26825 3' -57.1 NC_005809.1 + 6363 0.78 0.102275
Target:  5'- -gAAGGCCGGggcgcuggguuacacCAGGUCGGCCGcCGCg -3'
miRNA:   3'- agUUCCGGCU---------------GUUCAGCCGGCaGCGg -5'
26825 3' -57.1 NC_005809.1 + 14024 0.72 0.26761
Target:  5'- gCGAuGGCCGGCGgccgcaaGGUCGuGCCGUucaacaagcagCGCCg -3'
miRNA:   3'- aGUU-CCGGCUGU-------UCAGC-CGGCA-----------GCGG- -5'
26825 3' -57.1 NC_005809.1 + 31602 0.77 0.122101
Target:  5'- ---uGGCCGaACAGGUggccgcagugucccCGGCUGUCGCCg -3'
miRNA:   3'- aguuCCGGC-UGUUCA--------------GCCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 13591 0.73 0.212393
Target:  5'- aCGAGGacuaCGACAccuggcugaaAGUCGGCaUGUCGCUg -3'
miRNA:   3'- aGUUCCg---GCUGU----------UCAGCCG-GCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 5251 0.72 0.268292
Target:  5'- ---cGGCCGGCAGGUCGGg-GUCGgCa -3'
miRNA:   3'- aguuCCGGCUGUUCAGCCggCAGCgG- -5'
26825 3' -57.1 NC_005809.1 + 4824 0.7 0.327441
Target:  5'- gUCGGGGCCGGC------GCCGUCGUCg -3'
miRNA:   3'- -AGUUCCGGCUGuucagcCGGCAGCGG- -5'
26825 3' -57.1 NC_005809.1 + 19020 0.77 0.126614
Target:  5'- ----uGCCGGCGAuGUCGGCCGagGCCa -3'
miRNA:   3'- aguucCGGCUGUU-CAGCCGGCagCGG- -5'
26825 3' -57.1 NC_005809.1 + 24094 0.76 0.137626
Target:  5'- aUCAcGGUgGACGAaUCGGCCGaCGCCg -3'
miRNA:   3'- -AGUuCCGgCUGUUcAGCCGGCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.