miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26825 5' -54.3 NC_005809.1 + 21276 0.73 0.291702
Target:  5'- gUCGGCGuaagugucgGCcCAGCGGUCGGCGUCGAa -3'
miRNA:   3'- -GGCCGU---------UGcGUUGCCGGUCGUAGUUc -5'
26825 5' -54.3 NC_005809.1 + 22536 0.73 0.299276
Target:  5'- aCGcGCAGCGCGcGCGuGCCGGUguuGUCGAGg -3'
miRNA:   3'- gGC-CGUUGCGU-UGC-CGGUCG---UAGUUC- -5'
26825 5' -54.3 NC_005809.1 + 41686 0.73 0.307001
Target:  5'- uCUGGaaCAACGCGGCGGCCcuCGUCGAu -3'
miRNA:   3'- -GGCC--GUUGCGUUGCCGGucGUAGUUc -5'
26825 5' -54.3 NC_005809.1 + 25619 0.73 0.314878
Target:  5'- aCGGCGGCGCggUcGCCAGCAgcgCGu- -3'
miRNA:   3'- gGCCGUUGCGuuGcCGGUCGUa--GUuc -5'
26825 5' -54.3 NC_005809.1 + 26507 0.73 0.314878
Target:  5'- aCGGCGccgcGCGCGGCGGCCAcguGCG-CGAa -3'
miRNA:   3'- gGCCGU----UGCGUUGCCGGU---CGUaGUUc -5'
26825 5' -54.3 NC_005809.1 + 14889 0.72 0.356537
Target:  5'- cCCGGCuuucagggucuGCGCGGCgaucugcugcuGGCCGGCcUCAAGu -3'
miRNA:   3'- -GGCCGu----------UGCGUUG-----------CCGGUCGuAGUUC- -5'
26825 5' -54.3 NC_005809.1 + 24825 0.72 0.356537
Target:  5'- uCUGGCuGCGCAAUGGCUcgGGCAacgauugCAGGg -3'
miRNA:   3'- -GGCCGuUGCGUUGCCGG--UCGUa------GUUC- -5'
26825 5' -54.3 NC_005809.1 + 9318 0.72 0.347048
Target:  5'- cCUGGCGGCGCAcgucggcGCGGCgGGCGgcggCAu- -3'
miRNA:   3'- -GGCCGUUGCGU-------UGCCGgUCGUa---GUuc -5'
26825 5' -54.3 NC_005809.1 + 20906 0.72 0.33942
Target:  5'- gCCGGCAACGUgucGAUGcCCAGCcuuUCGAGu -3'
miRNA:   3'- -GGCCGUUGCG---UUGCcGGUCGu--AGUUC- -5'
26825 5' -54.3 NC_005809.1 + 618 0.72 0.36532
Target:  5'- gCCaGCAGCGCcguggacacGGCGuCCGGCGUCGAGu -3'
miRNA:   3'- -GGcCGUUGCG---------UUGCcGGUCGUAGUUC- -5'
26825 5' -54.3 NC_005809.1 + 24553 0.72 0.36532
Target:  5'- gUCGcGCAGCGCGGCgauggcgaGGCCGGCcacgGUCGGGc -3'
miRNA:   3'- -GGC-CGUUGCGUUG--------CCGGUCG----UAGUUC- -5'
26825 5' -54.3 NC_005809.1 + 38303 0.72 0.356537
Target:  5'- aCGGCcaucaccaugccGGCGCuGACGGCCGGCAcCGAc -3'
miRNA:   3'- gGCCG------------UUGCG-UUGCCGGUCGUaGUUc -5'
26825 5' -54.3 NC_005809.1 + 33941 0.72 0.33942
Target:  5'- gCCGGCGAccucgccacCGCAGCGGCCgagaAGCG-CAAc -3'
miRNA:   3'- -GGCCGUU---------GCGUUGCCGG----UCGUaGUUc -5'
26825 5' -54.3 NC_005809.1 + 13682 0.72 0.347903
Target:  5'- gUCGGCGACggccaGCAACuacGCCAGCAgCGAGg -3'
miRNA:   3'- -GGCCGUUG-----CGUUGc--CGGUCGUaGUUC- -5'
26825 5' -54.3 NC_005809.1 + 41787 0.71 0.401919
Target:  5'- aCGGCGauuGCGCAGCGGCCcgaucugaccGGCAa---- -3'
miRNA:   3'- gGCCGU---UGCGUUGCCGG----------UCGUaguuc -5'
26825 5' -54.3 NC_005809.1 + 7684 0.71 0.411426
Target:  5'- uUGGCGGCGaucuGCGGCCGGUAgcccUCGAa -3'
miRNA:   3'- gGCCGUUGCgu--UGCCGGUCGU----AGUUc -5'
26825 5' -54.3 NC_005809.1 + 37936 0.71 0.411426
Target:  5'- aUGGcCGACGCAGCguGGcCCAGCAUCc-- -3'
miRNA:   3'- gGCC-GUUGCGUUG--CC-GGUCGUAGuuc -5'
26825 5' -54.3 NC_005809.1 + 13293 0.71 0.421071
Target:  5'- gCCGauuGCAGCGCGccGgGGCCGGCGUUg-- -3'
miRNA:   3'- -GGC---CGUUGCGU--UgCCGGUCGUAGuuc -5'
26825 5' -54.3 NC_005809.1 + 32845 0.71 0.421071
Target:  5'- aCGGCuuCGCcuggccgcaGACGGUCGGCGcCGAGa -3'
miRNA:   3'- gGCCGuuGCG---------UUGCCGGUCGUaGUUC- -5'
26825 5' -54.3 NC_005809.1 + 14761 0.71 0.38333
Target:  5'- uUGGC-GCGCAGCGuGUCGGUGUCGAu -3'
miRNA:   3'- gGCCGuUGCGUUGC-CGGUCGUAGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.