miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26825 5' -54.3 NC_005809.1 + 42403 0.67 0.613167
Target:  5'- gCCGGCAuucugcGCGCGGCaGCUugGGCAcUCGAu -3'
miRNA:   3'- -GGCCGU------UGCGUUGcCGG--UCGU-AGUUc -5'
26825 5' -54.3 NC_005809.1 + 42386 0.78 0.143809
Target:  5'- cCCGGCAGCGUGACGGugcCCAGCGacacCGGGg -3'
miRNA:   3'- -GGCCGUUGCGUUGCC---GGUCGUa---GUUC- -5'
26825 5' -54.3 NC_005809.1 + 42119 0.66 0.714062
Target:  5'- gCGGUggUGC-GCGGCgAGCAg-AAGg -3'
miRNA:   3'- gGCCGuuGCGuUGCCGgUCGUagUUC- -5'
26825 5' -54.3 NC_005809.1 + 41787 0.71 0.401919
Target:  5'- aCGGCGauuGCGCAGCGGCCcgaucugaccGGCAa---- -3'
miRNA:   3'- gGCCGU---UGCGUUGCCGG----------UCGUaguuc -5'
26825 5' -54.3 NC_005809.1 + 41686 0.73 0.307001
Target:  5'- uCUGGaaCAACGCGGCGGCCcuCGUCGAu -3'
miRNA:   3'- -GGCC--GUUGCGUUGCCGGucGUAGUUc -5'
26825 5' -54.3 NC_005809.1 + 41431 0.69 0.535186
Target:  5'- aCGGCgAGCGCaAACGGCCGcuGC-UCAu- -3'
miRNA:   3'- gGCCG-UUGCG-UUGCCGGU--CGuAGUuc -5'
26825 5' -54.3 NC_005809.1 + 41398 0.66 0.680767
Target:  5'- aCGGCAGCGCGauACGGCU-GUccuUCAc- -3'
miRNA:   3'- gGCCGUUGCGU--UGCCGGuCGu--AGUuc -5'
26825 5' -54.3 NC_005809.1 + 41288 0.67 0.647033
Target:  5'- gCGGCG--GUGugGGCgGGCAUCAc- -3'
miRNA:   3'- gGCCGUugCGUugCCGgUCGUAGUuc -5'
26825 5' -54.3 NC_005809.1 + 39837 0.68 0.579456
Target:  5'- cCCGaGCAGCGCcg-GGCCGcGC-UCAAGc -3'
miRNA:   3'- -GGC-CGUUGCGuugCCGGU-CGuAGUUC- -5'
26825 5' -54.3 NC_005809.1 + 39638 0.76 0.190264
Target:  5'- gCCGcGCGACGCgguGugGGCCGGCAUgGGa -3'
miRNA:   3'- -GGC-CGUUGCG---UugCCGGUCGUAgUUc -5'
26825 5' -54.3 NC_005809.1 + 38694 0.67 0.613167
Target:  5'- gCGGCGACgGCAgcGCGGCCuacAGCGaCGGc -3'
miRNA:   3'- gGCCGUUG-CGU--UGCCGG---UCGUaGUUc -5'
26825 5' -54.3 NC_005809.1 + 38556 0.67 0.658307
Target:  5'- gCGGCAugACGCuggUGGCCGGCG-CGu- -3'
miRNA:   3'- gGCCGU--UGCGuu-GCCGGUCGUaGUuc -5'
26825 5' -54.3 NC_005809.1 + 38303 0.72 0.356537
Target:  5'- aCGGCcaucaccaugccGGCGCuGACGGCCGGCAcCGAc -3'
miRNA:   3'- gGCCG------------UUGCG-UUGCCGGUCGUaGUUc -5'
26825 5' -54.3 NC_005809.1 + 38225 1.12 0.000547
Target:  5'- aCCGGCAACGCAACGGCCAGCAUCAAGg -3'
miRNA:   3'- -GGCCGUUGCGUUGCCGGUCGUAGUUC- -5'
26825 5' -54.3 NC_005809.1 + 38008 0.7 0.440764
Target:  5'- aCCGaGCAGCGCcuCGGCgacuuCGGCcUCAAGc -3'
miRNA:   3'- -GGC-CGUUGCGuuGCCG-----GUCGuAGUUC- -5'
26825 5' -54.3 NC_005809.1 + 37952 0.7 0.468156
Target:  5'- gCGGCAGCGCGGgccaacauUGGCCuggcugaccugggcGGCAUCGc- -3'
miRNA:   3'- gGCCGUUGCGUU--------GCCGG--------------UCGUAGUuc -5'
26825 5' -54.3 NC_005809.1 + 37936 0.71 0.411426
Target:  5'- aUGGcCGACGCAGCguGGcCCAGCAUCc-- -3'
miRNA:   3'- gGCC-GUUGCGUUG--CC-GGUCGUAGuuc -5'
26825 5' -54.3 NC_005809.1 + 37753 0.67 0.635744
Target:  5'- aCGGCGACcuguCGcCGGCCAGCAa---- -3'
miRNA:   3'- gGCCGUUGc---GUuGCCGGUCGUaguuc -5'
26825 5' -54.3 NC_005809.1 + 37616 0.71 0.392553
Target:  5'- aCCaGCAGCGCGauacGCGGCU-GCAUCGu- -3'
miRNA:   3'- -GGcCGUUGCGU----UGCCGGuCGUAGUuc -5'
26825 5' -54.3 NC_005809.1 + 36985 0.66 0.680767
Target:  5'- -aGGCGgacaucgacACgGUGGCGGCCAGCGUUg-- -3'
miRNA:   3'- ggCCGU---------UG-CGUUGCCGGUCGUAGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.