Results 1 - 20 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 37942 | 1.06 | 0.00011 |
Target: 5'- uGCCGACCCUGCGGCAGCGCGGGCCAAc -3' miRNA: 3'- -CGGCUGGGACGCCGUCGCGCCCGGUU- -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 9724 | 0.67 | 0.157154 |
Target: 5'- cGCCGACCguCUGCGGCcaGGCGaa-GCCGu -3' miRNA: 3'- -CGGCUGG--GACGCCG--UCGCgccCGGUu -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 30559 | 0.67 | 0.174651 |
Target: 5'- cGCCGGCCa--CGGCcGCGCugcuGGCCGAc -3' miRNA: 3'- -CGGCUGGgacGCCGuCGCGc---CCGGUU- -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 14348 | 0.66 | 0.209463 |
Target: 5'- uCCGACCCgcgcGUGGUcgucGGCGU-GGCCGAc -3' miRNA: 3'- cGGCUGGGa---CGCCG----UCGCGcCCGGUU- -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 529 | 0.71 | 0.079597 |
Target: 5'- gGCCGAauaCCU-CGGaCGuGCGCGGGCCGc -3' miRNA: 3'- -CGGCUg--GGAcGCC-GU-CGCGCCCGGUu -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 10261 | 0.71 | 0.081835 |
Target: 5'- cGCCGGCCUUGaUGGCGGCGaUGaGGUCGc -3' miRNA: 3'- -CGGCUGGGAC-GCCGUCGC-GC-CCGGUu -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 27703 | 0.7 | 0.09065 |
Target: 5'- aGCCGggcaacuuaaaggcGCCCaGCGuGCGGCGCuGGCCGc -3' miRNA: 3'- -CGGC--------------UGGGaCGC-CGUCGCGcCCGGUu -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 7229 | 0.7 | 0.093956 |
Target: 5'- ---aGCCCUGCaacuucGGCcacuGGCGCGGGCCGAu -3' miRNA: 3'- cggcUGGGACG------CCG----UCGCGCCCGGUU- -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 41396 | 0.69 | 0.113806 |
Target: 5'- gGCCGACCCcgGCGGCgagacuauguggGGCGUGaccGCCGc -3' miRNA: 3'- -CGGCUGGGa-CGCCG------------UCGCGCc--CGGUu -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 5101 | 0.67 | 0.153035 |
Target: 5'- gGCCGGCCCaGCGucCGGUGCGGcuggcGCCGu -3' miRNA: 3'- -CGGCUGGGaCGCc-GUCGCGCC-----CGGUu -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 29392 | 0.68 | 0.133873 |
Target: 5'- cGCCGGCCaaggGCGccCAGCGC-GGCCGAc -3' miRNA: 3'- -CGGCUGGga--CGCc-GUCGCGcCCGGUU- -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 4040 | 0.7 | 0.104859 |
Target: 5'- aGCCGGCC--GCGGCgAGCGgCaGGCCAGc -3' miRNA: 3'- -CGGCUGGgaCGCCG-UCGC-GcCCGGUU- -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 30369 | 0.83 | 0.009425 |
Target: 5'- cCCGACCagggGCaGGCAGCGCGGGCCGGu -3' miRNA: 3'- cGGCUGGga--CG-CCGUCGCGCCCGGUU- -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 37790 | 0.68 | 0.141258 |
Target: 5'- aGCCGGCgugCUGgGcGCAGUGUGGGCgAAc -3' miRNA: 3'- -CGGCUGg--GACgC-CGUCGCGCCCGgUU- -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 41272 | 0.76 | 0.034219 |
Target: 5'- gGCCGucGCCCUgggcGCGGCGGUGUGGGCgGg -3' miRNA: 3'- -CGGC--UGGGA----CGCCGUCGCGCCCGgUu -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 19743 | 0.7 | 0.102027 |
Target: 5'- uGUCGGCUgU-CGGCAGCGCggcgaagucGGGCCAGu -3' miRNA: 3'- -CGGCUGGgAcGCCGUCGCG---------CCCGGUU- -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 29935 | 0.68 | 0.149013 |
Target: 5'- cCCGACCCaaagGaCGGCAGCaGCGauGCCGAg -3' miRNA: 3'- cGGCUGGGa---C-GCCGUCG-CGCc-CGGUU- -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 1859 | 0.67 | 0.160948 |
Target: 5'- cGCCGucuugcagguucaGCCC-GUGGcCGGCGCuGGCCGGg -3' miRNA: 3'- -CGGC-------------UGGGaCGCC-GUCGCGcCCGGUU- -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 15136 | 0.73 | 0.053815 |
Target: 5'- cGCCaGGgCCUGCGGCcgccgGGCGCGGugcGCCAGg -3' miRNA: 3'- -CGG-CUgGGACGCCG-----UCGCGCC---CGGUU- -5' |
|||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 1763 | 0.71 | 0.086493 |
Target: 5'- gGCCGGCCUgcGCcuGGC-GCGuCGGGCCGAu -3' miRNA: 3'- -CGGCUGGGa-CG--CCGuCGC-GCCCGGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home