miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26826 3' -65.2 NC_005809.1 + 29935 0.68 0.149013
Target:  5'- cCCGACCCaaagGaCGGCAGCaGCGauGCCGAg -3'
miRNA:   3'- cGGCUGGGa---C-GCCGUCG-CGCc-CGGUU- -5'
26826 3' -65.2 NC_005809.1 + 5101 0.67 0.153035
Target:  5'- gGCCGGCCCaGCGucCGGUGCGGcuggcGCCGu -3'
miRNA:   3'- -CGGCUGGGaCGCc-GUCGCGCC-----CGGUu -5'
26826 3' -65.2 NC_005809.1 + 14746 0.66 0.188893
Target:  5'- gGCCGGCgCCaccGCgGGCAGCGCGcGCgAGg -3'
miRNA:   3'- -CGGCUG-GGa--CG-CCGUCGCGCcCGgUU- -5'
26826 3' -65.2 NC_005809.1 + 38544 0.66 0.204146
Target:  5'- cGCuCGACCCgcGCGGCAuGaCGCugguGGCCGg -3'
miRNA:   3'- -CG-GCUGGGa-CGCCGU-C-GCGc---CCGGUu -5'
26826 3' -65.2 NC_005809.1 + 9724 0.67 0.157154
Target:  5'- cGCCGACCguCUGCGGCcaGGCGaa-GCCGu -3'
miRNA:   3'- -CGGCUGG--GACGCCG--UCGCgccCGGUu -5'
26826 3' -65.2 NC_005809.1 + 17046 0.67 0.181174
Target:  5'- cGCUG-CCg-GCGGCGGCaaaaccgaccucaucGCGGGCCu- -3'
miRNA:   3'- -CGGCuGGgaCGCCGUCG---------------CGCCCGGuu -5'
26826 3' -65.2 NC_005809.1 + 37978 0.66 0.19336
Target:  5'- gGCUGACCUggGCGGCAuCGCauaacuaGGaGCCAAc -3'
miRNA:   3'- -CGGCUGGGa-CGCCGUcGCG-------CC-CGGUU- -5'
26826 3' -65.2 NC_005809.1 + 37790 0.68 0.141258
Target:  5'- aGCCGGCgugCUGgGcGCAGUGUGGGCgAAc -3'
miRNA:   3'- -CGGCUGg--GACgC-CGUCGCGCCCGgUU- -5'
26826 3' -65.2 NC_005809.1 + 30559 0.67 0.174651
Target:  5'- cGCCGGCCa--CGGCcGCGCugcuGGCCGAc -3'
miRNA:   3'- -CGGCUGGgacGCCGuCGCGc---CCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 1859 0.67 0.160948
Target:  5'- cGCCGucuugcagguucaGCCC-GUGGcCGGCGCuGGCCGGg -3'
miRNA:   3'- -CGGC-------------UGGGaCGCC-GUCGCGcCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 18270 0.67 0.157154
Target:  5'- cGCCGAgaaCUUGcCGGCcGUcaGCGGGCCGGu -3'
miRNA:   3'- -CGGCUg--GGAC-GCCGuCG--CGCCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 30563 0.71 0.075295
Target:  5'- uGCCGGCCgcuguagaUGCGGCAGaugGUGGGCUGGg -3'
miRNA:   3'- -CGGCUGGg-------ACGCCGUCg--CGCCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 432 0.67 0.165696
Target:  5'- gGCCGuACCUUGUcguugGGCuGCuGCGcGGCCAGc -3'
miRNA:   3'- -CGGC-UGGGACG-----CCGuCG-CGC-CCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 13312 0.66 0.193862
Target:  5'- gGCCGGCgUUGUaGGCGGCGUaGGCUu- -3'
miRNA:   3'- -CGGCUGgGACG-CCGUCGCGcCCGGuu -5'
26826 3' -65.2 NC_005809.1 + 679 0.69 0.123462
Target:  5'- gGCCG-CCUa-CGGCGGCGCcGGCCGGg -3'
miRNA:   3'- -CGGCuGGGacGCCGUCGCGcCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 24234 0.66 0.201012
Target:  5'- gGCCGAUCUUcucgaugauguccucGCGGCuugccaccuugAGCGUGGcGCCGGa -3'
miRNA:   3'- -CGGCUGGGA---------------CGCCG-----------UCGCGCC-CGGUU- -5'
26826 3' -65.2 NC_005809.1 + 17635 0.66 0.204146
Target:  5'- uGCCGcAUCgUGCGGCAGUaC-GGCCAc -3'
miRNA:   3'- -CGGC-UGGgACGCCGUCGcGcCCGGUu -5'
26826 3' -65.2 NC_005809.1 + 36201 0.66 0.204146
Target:  5'- gGCCGACCUgGUGuaaccCAGCGCcccggccuucGGGCCGGg -3'
miRNA:   3'- -CGGCUGGGaCGCc----GUCGCG----------CCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 25598 0.67 0.157154
Target:  5'- -gCGGCCCagGCaguggcaaccacGGCGGCGCGGucGCCAGc -3'
miRNA:   3'- cgGCUGGGa-CG------------CCGUCGCGCC--CGGUU- -5'
26826 3' -65.2 NC_005809.1 + 25309 0.67 0.157154
Target:  5'- gGCCGGCCCUGCcacCGGCGCucgucGCCGGg -3'
miRNA:   3'- -CGGCUGGGACGcc-GUCGCGcc---CGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.