Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26826 | 3' | -65.2 | NC_005809.1 | + | 13312 | 0.66 | 0.193862 |
Target: 5'- gGCCGGCgUUGUaGGCGGCGUaGGCUu- -3' miRNA: 3'- -CGGCUGgGACG-CCGUCGCGcCCGGuu -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 14348 | 0.66 | 0.209463 |
Target: 5'- uCCGACCCgcgcGUGGUcgucGGCGU-GGCCGAc -3' miRNA: 3'- cGGCUGGGa---CGCCG----UCGCGcCCGGUU- -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 14746 | 0.66 | 0.188893 |
Target: 5'- gGCCGGCgCCaccGCgGGCAGCGCGcGCgAGg -3' miRNA: 3'- -CGGCUG-GGa--CG-CCGUCGCGCcCGgUU- -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 15136 | 0.73 | 0.053815 |
Target: 5'- cGCCaGGgCCUGCGGCcgccgGGCGCGGugcGCCAGg -3' miRNA: 3'- -CGG-CUgGGACGCCG-----UCGCGCC---CGGUU- -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 17046 | 0.67 | 0.181174 |
Target: 5'- cGCUG-CCg-GCGGCGGCaaaaccgaccucaucGCGGGCCu- -3' miRNA: 3'- -CGGCuGGgaCGCCGUCG---------------CGCCCGGuu -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 17635 | 0.66 | 0.204146 |
Target: 5'- uGCCGcAUCgUGCGGCAGUaC-GGCCAc -3' miRNA: 3'- -CGGC-UGGgACGCCGUCGcGcCCGGUu -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 18270 | 0.67 | 0.157154 |
Target: 5'- cGCCGAgaaCUUGcCGGCcGUcaGCGGGCCGGu -3' miRNA: 3'- -CGGCUg--GGAC-GCCGuCG--CGCCCGGUU- -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 19743 | 0.7 | 0.102027 |
Target: 5'- uGUCGGCUgU-CGGCAGCGCggcgaagucGGGCCAGu -3' miRNA: 3'- -CGGCUGGgAcGCCGUCGCG---------CCCGGUU- -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 23561 | 0.67 | 0.170121 |
Target: 5'- gGCCGACaucGcCGGCAgGUGCGGGCgGGg -3' miRNA: 3'- -CGGCUGggaC-GCCGU-CGCGCCCGgUU- -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 24234 | 0.66 | 0.201012 |
Target: 5'- gGCCGAUCUUcucgaugauguccucGCGGCuugccaccuugAGCGUGGcGCCGGa -3' miRNA: 3'- -CGGCUGGGA---------------CGCCG-----------UCGCGCC-CGGUU- -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 24422 | 0.69 | 0.110747 |
Target: 5'- aGCCGGCCCgauuUGuCGGUgccGCGCGcGGCCu- -3' miRNA: 3'- -CGGCUGGG----AC-GCCGu--CGCGC-CCGGuu -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 25261 | 0.66 | 0.185965 |
Target: 5'- aGCCGGCCCauaugccggaauggaUGCGcGCc-CGCGGcGCCGg -3' miRNA: 3'- -CGGCUGGG---------------ACGC-CGucGCGCC-CGGUu -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 25309 | 0.67 | 0.157154 |
Target: 5'- gGCCGGCCCUGCcacCGGCGCucgucGCCGGg -3' miRNA: 3'- -CGGCUGGGACGcc-GUCGCGcc---CGGUU- -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 25598 | 0.67 | 0.157154 |
Target: 5'- -gCGGCCCagGCaguggcaaccacGGCGGCGCGGucGCCAGc -3' miRNA: 3'- cgGCUGGGa-CG------------CCGUCGCGCC--CGGUU- -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 27703 | 0.7 | 0.09065 |
Target: 5'- aGCCGggcaacuuaaaggcGCCCaGCGuGCGGCGCuGGCCGc -3' miRNA: 3'- -CGGC--------------UGGGaCGC-CGUCGCGcCCGGUu -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 27830 | 0.7 | 0.091403 |
Target: 5'- cGCUG-CCC-GCGGUGGCGCcGGCCGc -3' miRNA: 3'- -CGGCuGGGaCGCCGUCGCGcCCGGUu -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 28397 | 0.68 | 0.133873 |
Target: 5'- uUCGACgC--CGGCGGCGCGGcGCCAGu -3' miRNA: 3'- cGGCUGgGacGCCGUCGCGCC-CGGUU- -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 28545 | 0.72 | 0.06531 |
Target: 5'- gGCaCGACCUUGCGGCcgccggccaucgcGGCGCGcacgucGGCCAc -3' miRNA: 3'- -CG-GCUGGGACGCCG-------------UCGCGC------CCGGUu -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 29392 | 0.68 | 0.133873 |
Target: 5'- cGCCGGCCaaggGCGccCAGCGC-GGCCGAc -3' miRNA: 3'- -CGGCUGGga--CGCc-GUCGCGcCCGGUU- -5' |
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26826 | 3' | -65.2 | NC_005809.1 | + | 29935 | 0.68 | 0.149013 |
Target: 5'- cCCGACCCaaagGaCGGCAGCaGCGauGCCGAg -3' miRNA: 3'- cGGCUGGGa---C-GCCGUCG-CGCc-CGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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