miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26826 3' -65.2 NC_005809.1 + 24422 0.69 0.110747
Target:  5'- aGCCGGCCCgauuUGuCGGUgccGCGCGcGGCCu- -3'
miRNA:   3'- -CGGCUGGG----AC-GCCGu--CGCGC-CCGGuu -5'
26826 3' -65.2 NC_005809.1 + 679 0.69 0.123462
Target:  5'- gGCCG-CCUa-CGGCGGCGCcGGCCGGg -3'
miRNA:   3'- -CGGCuGGGacGCCGUCGCGcCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 9192 0.69 0.123462
Target:  5'- cGUCGACguuggCCUGCucGGCGGCGCGGcGCaCGu -3'
miRNA:   3'- -CGGCUG-----GGACG--CCGUCGCGCC-CG-GUu -5'
26826 3' -65.2 NC_005809.1 + 10674 0.68 0.130316
Target:  5'- cGCCGugUCcaguugcgucuUGaCGGCAGCGCGcacggccucGGCCGAu -3'
miRNA:   3'- -CGGCugGG-----------AC-GCCGUCGCGC---------CCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 28397 0.68 0.133873
Target:  5'- uUCGACgC--CGGCGGCGCGGcGCCAGu -3'
miRNA:   3'- cGGCUGgGacGCCGUCGCGCC-CGGUU- -5'
26826 3' -65.2 NC_005809.1 + 2206 0.67 0.152628
Target:  5'- uGCCGacGCCCUcgucggguaGCaccacgcgcagcaGGCGGCGCGuGGCCGc -3'
miRNA:   3'- -CGGC--UGGGA---------CG-------------CCGUCGCGC-CCGGUu -5'
26826 3' -65.2 NC_005809.1 + 25309 0.67 0.157154
Target:  5'- gGCCGGCCCUGCcacCGGCGCucgucGCCGGg -3'
miRNA:   3'- -CGGCUGGGACGcc-GUCGCGcc---CGGUU- -5'
26826 3' -65.2 NC_005809.1 + 7229 0.7 0.093956
Target:  5'- ---aGCCCUGCaacuucGGCcacuGGCGCGGGCCGAu -3'
miRNA:   3'- cggcUGGGACG------CCG----UCGCGCCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 19743 0.7 0.102027
Target:  5'- uGUCGGCUgU-CGGCAGCGCggcgaagucGGGCCAGu -3'
miRNA:   3'- -CGGCUGGgAcGCCGUCGCG---------CCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 4040 0.7 0.104859
Target:  5'- aGCCGGCC--GCGGCgAGCGgCaGGCCAGc -3'
miRNA:   3'- -CGGCUGGgaCGCCG-UCGC-GcCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 41396 0.69 0.113806
Target:  5'- gGCCGACCCcgGCGGCgagacuauguggGGCGUGaccGCCGc -3'
miRNA:   3'- -CGGCUGGGa-CGCCG------------UCGCGCc--CGGUu -5'
26826 3' -65.2 NC_005809.1 + 34169 0.69 0.120161
Target:  5'- cGCaCGGCCCUGgccgacUGGCuacgcagccAGCGCGaGGCCGGg -3'
miRNA:   3'- -CG-GCUGGGAC------GCCG---------UCGCGC-CCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 27703 0.7 0.09065
Target:  5'- aGCCGggcaacuuaaaggcGCCCaGCGuGCGGCGCuGGCCGc -3'
miRNA:   3'- -CGGC--------------UGGGaCGC-CGUCGCGcCCGGUu -5'
26826 3' -65.2 NC_005809.1 + 1763 0.71 0.086493
Target:  5'- gGCCGGCCUgcGCcuGGC-GCGuCGGGCCGAu -3'
miRNA:   3'- -CGGCUGGGa-CG--CCGuCGC-GCCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 10261 0.71 0.081835
Target:  5'- cGCCGGCCUUGaUGGCGGCGaUGaGGUCGc -3'
miRNA:   3'- -CGGCUGGGAC-GCCGUCGC-GC-CCGGUu -5'
26826 3' -65.2 NC_005809.1 + 529 0.71 0.079597
Target:  5'- gGCCGAauaCCU-CGGaCGuGCGCGGGCCGc -3'
miRNA:   3'- -CGGCUg--GGAcGCC-GU-CGCGCCCGGUu -5'
26826 3' -65.2 NC_005809.1 + 15136 0.73 0.053815
Target:  5'- cGCCaGGgCCUGCGGCcgccgGGCGCGGugcGCCAGg -3'
miRNA:   3'- -CGG-CUgGGACGCCG-----UCGCGCC---CGGUU- -5'
26826 3' -65.2 NC_005809.1 + 41272 0.76 0.034219
Target:  5'- gGCCGucGCCCUgggcGCGGCGGUGUGGGCgGg -3'
miRNA:   3'- -CGGC--UGGGA----CGCCGUCGCGCCCGgUu -5'
26826 3' -65.2 NC_005809.1 + 30369 0.83 0.009425
Target:  5'- cCCGACCagggGCaGGCAGCGCGGGCCGGu -3'
miRNA:   3'- cGGCUGGga--CG-CCGUCGCGCCCGGUU- -5'
26826 3' -65.2 NC_005809.1 + 14348 0.66 0.209463
Target:  5'- uCCGACCCgcgcGUGGUcgucGGCGU-GGCCGAc -3'
miRNA:   3'- cGGCUGGGa---CGCCG----UCGCGcCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.