miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26826 5' -55.8 NC_005809.1 + 37977 1.11 0.000395
Target:  5'- uGGCUGACCUGGGCGGCAUCGCAUAACu -3'
miRNA:   3'- -CCGACUGGACCCGCCGUAGCGUAUUG- -5'
26826 5' -55.8 NC_005809.1 + 30996 0.79 0.098644
Target:  5'- cGGCgGcCCUGGGCGGCAUgGCuucgAUGACc -3'
miRNA:   3'- -CCGaCuGGACCCGCCGUAgCG----UAUUG- -5'
26826 5' -55.8 NC_005809.1 + 7052 0.75 0.18425
Target:  5'- aGGCgcaUGGCCUcGGGCGGCAgcgUCGUuugAACa -3'
miRNA:   3'- -CCG---ACUGGA-CCCGCCGU---AGCGua-UUG- -5'
26826 5' -55.8 NC_005809.1 + 10225 0.74 0.211265
Target:  5'- cGGCgaccgcagcGACCUGGGCGGCgGUUGUcggGACg -3'
miRNA:   3'- -CCGa--------CUGGACCCGCCG-UAGCGua-UUG- -5'
26826 5' -55.8 NC_005809.1 + 333 0.74 0.217062
Target:  5'- aGGCUGGC---GGUGGCGUCGCGcAGCa -3'
miRNA:   3'- -CCGACUGgacCCGCCGUAGCGUaUUG- -5'
26826 5' -55.8 NC_005809.1 + 35327 0.73 0.241622
Target:  5'- ---aGACCUGGGCGGCcgacAUCGCcgAGg -3'
miRNA:   3'- ccgaCUGGACCCGCCG----UAGCGuaUUg -5'
26826 5' -55.8 NC_005809.1 + 34512 0.72 0.268455
Target:  5'- aGGCagcGACCUGGGCGcGCGUCauggacggcgGCAagGACg -3'
miRNA:   3'- -CCGa--CUGGACCCGC-CGUAG----------CGUa-UUG- -5'
26826 5' -55.8 NC_005809.1 + 37046 0.71 0.297641
Target:  5'- gGGCgGaACCUGGGCGGCcggCGUGUccuACg -3'
miRNA:   3'- -CCGaC-UGGACCCGCCGua-GCGUAu--UG- -5'
26826 5' -55.8 NC_005809.1 + 33891 0.71 0.321106
Target:  5'- cGGCgcacACCUGGGCGGCGcaGCAgccGCu -3'
miRNA:   3'- -CCGac--UGGACCCGCCGUagCGUau-UG- -5'
26826 5' -55.8 NC_005809.1 + 4093 0.7 0.372095
Target:  5'- aGGCcGGCCaggUGGGCGGCgcugaauucGUCGCGg--- -3'
miRNA:   3'- -CCGaCUGG---ACCCGCCG---------UAGCGUauug -5'
26826 5' -55.8 NC_005809.1 + 6703 0.7 0.381112
Target:  5'- aGGCacaccuUGuCCUGGGCGcGCAUCuGCuugAGCa -3'
miRNA:   3'- -CCG------ACuGGACCCGC-CGUAG-CGua-UUG- -5'
26826 5' -55.8 NC_005809.1 + 8598 0.69 0.390274
Target:  5'- cGGC-GACCgugGGGaUGGCGUagGCGUGGCc -3'
miRNA:   3'- -CCGaCUGGa--CCC-GCCGUAg-CGUAUUG- -5'
26826 5' -55.8 NC_005809.1 + 13456 0.69 0.399579
Target:  5'- uGGC-GGCCUcgGGcGCGGUGUCggGCAUGACc -3'
miRNA:   3'- -CCGaCUGGA--CC-CGCCGUAG--CGUAUUG- -5'
26826 5' -55.8 NC_005809.1 + 26269 0.69 0.409024
Target:  5'- cGCcGGCCUGGuCGGCucgCGCAUcGCg -3'
miRNA:   3'- cCGaCUGGACCcGCCGua-GCGUAuUG- -5'
26826 5' -55.8 NC_005809.1 + 11600 0.69 0.414757
Target:  5'- cGGCUGGCCgccGGGCaGCAgugccagcggaaGCAUGAg -3'
miRNA:   3'- -CCGACUGGa--CCCGcCGUag----------CGUAUUg -5'
26826 5' -55.8 NC_005809.1 + 11850 0.69 0.418607
Target:  5'- cGGUUGGCCUGGGCGaaccccgcGCcaauAUCGCccAUGAg -3'
miRNA:   3'- -CCGACUGGACCCGC--------CG----UAGCG--UAUUg -5'
26826 5' -55.8 NC_005809.1 + 9198 0.69 0.428325
Target:  5'- cGUUGGCCUGcucGGCGGCGcggCGCAc--- -3'
miRNA:   3'- cCGACUGGAC---CCGCCGUa--GCGUauug -5'
26826 5' -55.8 NC_005809.1 + 29175 0.68 0.437185
Target:  5'- aGGCUuccucGACUUGGGCcucggugaugaccGGCAggucggacgcgCGCAUGGCg -3'
miRNA:   3'- -CCGA-----CUGGACCCG-------------CCGUa----------GCGUAUUG- -5'
26826 5' -55.8 NC_005809.1 + 22944 0.68 0.438175
Target:  5'- cGCUGGCCgauucGCGGCc-CGCAUGACc -3'
miRNA:   3'- cCGACUGGacc--CGCCGuaGCGUAUUG- -5'
26826 5' -55.8 NC_005809.1 + 37870 0.68 0.448154
Target:  5'- gGGCU-ACgaGGGCGGCGUCGg----- -3'
miRNA:   3'- -CCGAcUGgaCCCGCCGUAGCguauug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.