miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26826 5' -55.8 NC_005809.1 + 4531 0.68 0.448154
Target:  5'- uGGC-GugCUGGGCGGUcgUGCcgccGCg -3'
miRNA:   3'- -CCGaCugGACCCGCCGuaGCGuau-UG- -5'
26826 5' -55.8 NC_005809.1 + 27748 0.68 0.48927
Target:  5'- cGGCaucGACCUGGGCgaaGGCAgcgcCGCcgAGg -3'
miRNA:   3'- -CCGa--CUGGACCCG---CCGUa---GCGuaUUg -5'
26826 5' -55.8 NC_005809.1 + 36129 0.67 0.499826
Target:  5'- cGGCgacGCCUucgcGGGCGGUgguGUCGCG-AGCg -3'
miRNA:   3'- -CCGac-UGGA----CCCGCCG---UAGCGUaUUG- -5'
26826 5' -55.8 NC_005809.1 + 10500 0.67 0.499826
Target:  5'- uGUUGGCg-GGGCcgaugagcauGGCGUCGCAUAGu -3'
miRNA:   3'- cCGACUGgaCCCG----------CCGUAGCGUAUUg -5'
26826 5' -55.8 NC_005809.1 + 1998 0.67 0.542983
Target:  5'- uGGCUGAUCuUGaGGCccaGGCGcUCGC-UGGCg -3'
miRNA:   3'- -CCGACUGG-AC-CCG---CCGU-AGCGuAUUG- -5'
26826 5' -55.8 NC_005809.1 + 32370 0.67 0.553971
Target:  5'- cGCcGACCaucGGGcCGGCGUgCGCuUGACg -3'
miRNA:   3'- cCGaCUGGa--CCC-GCCGUA-GCGuAUUG- -5'
26826 5' -55.8 NC_005809.1 + 41765 0.67 0.553971
Target:  5'- cGGCaaGGgCUGGGCGcggcGCGUCGCcgGAa -3'
miRNA:   3'- -CCGa-CUgGACCCGC----CGUAGCGuaUUg -5'
26826 5' -55.8 NC_005809.1 + 9312 0.67 0.553972
Target:  5'- cGGC-GACCU-GGCGGCGcacgucggCGCGgcgGGCg -3'
miRNA:   3'- -CCGaCUGGAcCCGCCGUa-------GCGUa--UUG- -5'
26826 5' -55.8 NC_005809.1 + 12267 0.66 0.576136
Target:  5'- cGGUagUGuCCUGGGCGG-GUUGC-UGGCc -3'
miRNA:   3'- -CCG--ACuGGACCCGCCgUAGCGuAUUG- -5'
26826 5' -55.8 NC_005809.1 + 12454 0.66 0.598492
Target:  5'- cGGCgUGuuCUGGcGCGGCcucAUCGCcuggGACa -3'
miRNA:   3'- -CCG-ACugGACC-CGCCG---UAGCGua--UUG- -5'
26826 5' -55.8 NC_005809.1 + 31080 0.66 0.60972
Target:  5'- cGCUGcCCUuuGCGGUGUCGCAggcGACc -3'
miRNA:   3'- cCGACuGGAccCGCCGUAGCGUa--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.