miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26826 5' -55.8 NC_005809.1 + 30996 0.79 0.098644
Target:  5'- cGGCgGcCCUGGGCGGCAUgGCuucgAUGACc -3'
miRNA:   3'- -CCGaCuGGACCCGCCGUAgCG----UAUUG- -5'
26826 5' -55.8 NC_005809.1 + 31080 0.66 0.60972
Target:  5'- cGCUGcCCUuuGCGGUGUCGCAggcGACc -3'
miRNA:   3'- cCGACuGGAccCGCCGUAGCGUa--UUG- -5'
26826 5' -55.8 NC_005809.1 + 32370 0.67 0.553971
Target:  5'- cGCcGACCaucGGGcCGGCGUgCGCuUGACg -3'
miRNA:   3'- cCGaCUGGa--CCC-GCCGUA-GCGuAUUG- -5'
26826 5' -55.8 NC_005809.1 + 33891 0.71 0.321106
Target:  5'- cGGCgcacACCUGGGCGGCGcaGCAgccGCu -3'
miRNA:   3'- -CCGac--UGGACCCGCCGUagCGUau-UG- -5'
26826 5' -55.8 NC_005809.1 + 34512 0.72 0.268455
Target:  5'- aGGCagcGACCUGGGCGcGCGUCauggacggcgGCAagGACg -3'
miRNA:   3'- -CCGa--CUGGACCCGC-CGUAG----------CGUa-UUG- -5'
26826 5' -55.8 NC_005809.1 + 35327 0.73 0.241622
Target:  5'- ---aGACCUGGGCGGCcgacAUCGCcgAGg -3'
miRNA:   3'- ccgaCUGGACCCGCCG----UAGCGuaUUg -5'
26826 5' -55.8 NC_005809.1 + 36129 0.67 0.499826
Target:  5'- cGGCgacGCCUucgcGGGCGGUgguGUCGCG-AGCg -3'
miRNA:   3'- -CCGac-UGGA----CCCGCCG---UAGCGUaUUG- -5'
26826 5' -55.8 NC_005809.1 + 37046 0.71 0.297641
Target:  5'- gGGCgGaACCUGGGCGGCcggCGUGUccuACg -3'
miRNA:   3'- -CCGaC-UGGACCCGCCGua-GCGUAu--UG- -5'
26826 5' -55.8 NC_005809.1 + 37870 0.68 0.448154
Target:  5'- gGGCU-ACgaGGGCGGCGUCGg----- -3'
miRNA:   3'- -CCGAcUGgaCCCGCCGUAGCguauug -5'
26826 5' -55.8 NC_005809.1 + 37977 1.11 0.000395
Target:  5'- uGGCUGACCUGGGCGGCAUCGCAUAACu -3'
miRNA:   3'- -CCGACUGGACCCGCCGUAGCGUAUUG- -5'
26826 5' -55.8 NC_005809.1 + 41765 0.67 0.553971
Target:  5'- cGGCaaGGgCUGGGCGcggcGCGUCGCcgGAa -3'
miRNA:   3'- -CCGa-CUgGACCCGC----CGUAGCGuaUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.