Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26826 | 5' | -55.8 | NC_005809.1 | + | 41765 | 0.67 | 0.553971 |
Target: 5'- cGGCaaGGgCUGGGCGcggcGCGUCGCcgGAa -3' miRNA: 3'- -CCGa-CUgGACCCGC----CGUAGCGuaUUg -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 37977 | 1.11 | 0.000395 |
Target: 5'- uGGCUGACCUGGGCGGCAUCGCAUAACu -3' miRNA: 3'- -CCGACUGGACCCGCCGUAGCGUAUUG- -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 37870 | 0.68 | 0.448154 |
Target: 5'- gGGCU-ACgaGGGCGGCGUCGg----- -3' miRNA: 3'- -CCGAcUGgaCCCGCCGUAGCguauug -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 37046 | 0.71 | 0.297641 |
Target: 5'- gGGCgGaACCUGGGCGGCcggCGUGUccuACg -3' miRNA: 3'- -CCGaC-UGGACCCGCCGua-GCGUAu--UG- -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 36129 | 0.67 | 0.499826 |
Target: 5'- cGGCgacGCCUucgcGGGCGGUgguGUCGCG-AGCg -3' miRNA: 3'- -CCGac-UGGA----CCCGCCG---UAGCGUaUUG- -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 35327 | 0.73 | 0.241622 |
Target: 5'- ---aGACCUGGGCGGCcgacAUCGCcgAGg -3' miRNA: 3'- ccgaCUGGACCCGCCG----UAGCGuaUUg -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 34512 | 0.72 | 0.268455 |
Target: 5'- aGGCagcGACCUGGGCGcGCGUCauggacggcgGCAagGACg -3' miRNA: 3'- -CCGa--CUGGACCCGC-CGUAG----------CGUa-UUG- -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 33891 | 0.71 | 0.321106 |
Target: 5'- cGGCgcacACCUGGGCGGCGcaGCAgccGCu -3' miRNA: 3'- -CCGac--UGGACCCGCCGUagCGUau-UG- -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 32370 | 0.67 | 0.553971 |
Target: 5'- cGCcGACCaucGGGcCGGCGUgCGCuUGACg -3' miRNA: 3'- cCGaCUGGa--CCC-GCCGUA-GCGuAUUG- -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 31080 | 0.66 | 0.60972 |
Target: 5'- cGCUGcCCUuuGCGGUGUCGCAggcGACc -3' miRNA: 3'- cCGACuGGAccCGCCGUAGCGUa--UUG- -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 30996 | 0.79 | 0.098644 |
Target: 5'- cGGCgGcCCUGGGCGGCAUgGCuucgAUGACc -3' miRNA: 3'- -CCGaCuGGACCCGCCGUAgCG----UAUUG- -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 29175 | 0.68 | 0.437185 |
Target: 5'- aGGCUuccucGACUUGGGCcucggugaugaccGGCAggucggacgcgCGCAUGGCg -3' miRNA: 3'- -CCGA-----CUGGACCCG-------------CCGUa----------GCGUAUUG- -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 27748 | 0.68 | 0.48927 |
Target: 5'- cGGCaucGACCUGGGCgaaGGCAgcgcCGCcgAGg -3' miRNA: 3'- -CCGa--CUGGACCCG---CCGUa---GCGuaUUg -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 26269 | 0.69 | 0.409024 |
Target: 5'- cGCcGGCCUGGuCGGCucgCGCAUcGCg -3' miRNA: 3'- cCGaCUGGACCcGCCGua-GCGUAuUG- -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 22944 | 0.68 | 0.438175 |
Target: 5'- cGCUGGCCgauucGCGGCc-CGCAUGACc -3' miRNA: 3'- cCGACUGGacc--CGCCGuaGCGUAUUG- -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 13456 | 0.69 | 0.399579 |
Target: 5'- uGGC-GGCCUcgGGcGCGGUGUCggGCAUGACc -3' miRNA: 3'- -CCGaCUGGA--CC-CGCCGUAG--CGUAUUG- -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 12454 | 0.66 | 0.598492 |
Target: 5'- cGGCgUGuuCUGGcGCGGCcucAUCGCcuggGACa -3' miRNA: 3'- -CCG-ACugGACC-CGCCG---UAGCGua--UUG- -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 12267 | 0.66 | 0.576136 |
Target: 5'- cGGUagUGuCCUGGGCGG-GUUGC-UGGCc -3' miRNA: 3'- -CCG--ACuGGACCCGCCgUAGCGuAUUG- -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 11850 | 0.69 | 0.418607 |
Target: 5'- cGGUUGGCCUGGGCGaaccccgcGCcaauAUCGCccAUGAg -3' miRNA: 3'- -CCGACUGGACCCGC--------CG----UAGCG--UAUUg -5' |
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26826 | 5' | -55.8 | NC_005809.1 | + | 11600 | 0.69 | 0.414757 |
Target: 5'- cGGCUGGCCgccGGGCaGCAgugccagcggaaGCAUGAg -3' miRNA: 3'- -CCGACUGGa--CCCGcCGUag----------CGUAUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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