miRNA display CGI


Results 41 - 60 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26828 3' -47.7 NC_005809.1 + 17321 0.67 0.950255
Target:  5'- aGCAGCGCGaGCAACA--GGUGCG-CUu -3'
miRNA:   3'- -UGUUGCGUcUGUUGUagUUACGCuGG- -5'
26828 3' -47.7 NC_005809.1 + 24386 0.67 0.950255
Target:  5'- aACGA-GguGACAGCAUgGAaGUGAUCg -3'
miRNA:   3'- -UGUUgCguCUGUUGUAgUUaCGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 29018 0.67 0.950255
Target:  5'- aACAuCGCcGugGGCAcCGAgucagGCGGCCg -3'
miRNA:   3'- -UGUuGCGuCugUUGUaGUUa----CGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 37871 0.67 0.945293
Target:  5'- gGCuACGaGGGCGGCGUCGGUGCcuuucucACCg -3'
miRNA:   3'- -UGuUGCgUCUGUUGUAGUUACGc------UGG- -5'
26828 3' -47.7 NC_005809.1 + 33895 0.67 0.945293
Target:  5'- cCAACGCcgaGGugcgcGCGGCAcgCAAUGcCGACCg -3'
miRNA:   3'- uGUUGCG---UC-----UGUUGUa-GUUAC-GCUGG- -5'
26828 3' -47.7 NC_005809.1 + 37716 0.67 0.94478
Target:  5'- gGCAACGaccugacCGGGCAACcuauggucAUCGAcuacgGCGACCu -3'
miRNA:   3'- -UGUUGC-------GUCUGUUG--------UAGUUa----CGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 34524 0.67 0.94478
Target:  5'- -gGGCGCgcgucauGGACGGCggCAAggacgGCGGCCc -3'
miRNA:   3'- ugUUGCG-------UCUGUUGuaGUUa----CGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 4384 0.67 0.942165
Target:  5'- cGCAGC-CAGGCGcCGUCGcgccgggccuugagcGUGCGGCa -3'
miRNA:   3'- -UGUUGcGUCUGUuGUAGU---------------UACGCUGg -5'
26828 3' -47.7 NC_005809.1 + 5146 0.67 0.940017
Target:  5'- uGCcGCGCAGGCGGcCGUCGcUGCucacGCCc -3'
miRNA:   3'- -UGuUGCGUCUGUU-GUAGUuACGc---UGG- -5'
26828 3' -47.7 NC_005809.1 + 26877 0.67 0.940017
Target:  5'- cCAG-GCGGACGccuucuuCGUCGAUaGCGGCCu -3'
miRNA:   3'- uGUUgCGUCUGUu------GUAGUUA-CGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 14762 0.67 0.934424
Target:  5'- gGCAGCGCGcgcGAgGACGUgc-UGCGGCUg -3'
miRNA:   3'- -UGUUGCGU---CUgUUGUAguuACGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 40485 0.67 0.933847
Target:  5'- -gGGCGCgcuacauGGACGACAUCGuggugcuggGCGACg -3'
miRNA:   3'- ugUUGCG-------UCUGUUGUAGUua-------CGCUGg -5'
26828 3' -47.7 NC_005809.1 + 19240 0.67 0.933847
Target:  5'- cGCGGCGuCAGGCccaugaacuucucGGCGUCGAUGCuggaaucGCCg -3'
miRNA:   3'- -UGUUGC-GUCUG-------------UUGUAGUUACGc------UGG- -5'
26828 3' -47.7 NC_005809.1 + 14404 0.68 0.928512
Target:  5'- -gGGCGUGGGCAACggcgugGUCGAUcUGACCa -3'
miRNA:   3'- ugUUGCGUCUGUUG------UAGUUAcGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 15115 0.68 0.928512
Target:  5'- cGCGGCGCGcuGGCAuaccaGCGcCAGggccUGCGGCCg -3'
miRNA:   3'- -UGUUGCGU--CUGU-----UGUaGUU----ACGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 5337 0.68 0.928512
Target:  5'- -uGGCGCAGcAUGGCAUCGcgcUGCGugGCCg -3'
miRNA:   3'- ugUUGCGUC-UGUUGUAGUu--ACGC--UGG- -5'
26828 3' -47.7 NC_005809.1 + 27591 0.68 0.928512
Target:  5'- nCAAUGCcGACGcCAUUcugGCGACCg -3'
miRNA:   3'- uGUUGCGuCUGUuGUAGuuaCGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 9336 0.68 0.92481
Target:  5'- cGCGGCGgGcGGCGGCAUCcuuuugcaguugcuuGAugaUGCGGCCg -3'
miRNA:   3'- -UGUUGCgU-CUGUUGUAG---------------UU---ACGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 32885 0.68 0.922279
Target:  5'- --cGCGCccgacuggaaGGACAACAagAAcUGCGGCCa -3'
miRNA:   3'- uguUGCG----------UCUGUUGUagUU-ACGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 38377 0.68 0.922279
Target:  5'- gACGugcuCGCGGcCAACAugcccgccaUCGAgGCGGCCg -3'
miRNA:   3'- -UGUu---GCGUCuGUUGU---------AGUUaCGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.