miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26828 3' -47.7 NC_005809.1 + 14552 0.66 0.970548
Target:  5'- gGCGACGCcGACAugAUCGGcuucuuccaGCG-CCu -3'
miRNA:   3'- -UGUUGCGuCUGUugUAGUUa--------CGCuGG- -5'
26828 3' -47.7 NC_005809.1 + 14713 0.72 0.738611
Target:  5'- gGCgAGCGCGGACAcguucuugaGCAgCGGcGCGGCCg -3'
miRNA:   3'- -UG-UUGCGUCUGU---------UGUaGUUaCGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 14745 0.66 0.967068
Target:  5'- gGCAguacGCGCAGcauuggcgcGCAGCGugUCGGUGuCGAUCu -3'
miRNA:   3'- -UGU----UGCGUC---------UGUUGU--AGUUAC-GCUGG- -5'
26828 3' -47.7 NC_005809.1 + 14762 0.67 0.934424
Target:  5'- gGCAGCGCGcgcGAgGACGUgc-UGCGGCUg -3'
miRNA:   3'- -UGUUGCGU---CUgUUGUAguuACGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 15058 0.66 0.973447
Target:  5'- -uGAUGCGGGCAAUGUucgacugaaauugCAGgcugcuuugcUGCGACCg -3'
miRNA:   3'- ugUUGCGUCUGUUGUA-------------GUU----------ACGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 15115 0.68 0.928512
Target:  5'- cGCGGCGCGcuGGCAuaccaGCGcCAGggccUGCGGCCg -3'
miRNA:   3'- -UGUUGCGU--CUGU-----UGUaGUU----ACGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 16251 0.7 0.842982
Target:  5'- gAUAugGCGGAUGGCGUUGGccucgcgcGCGGCCa -3'
miRNA:   3'- -UGUugCGUCUGUUGUAGUUa-------CGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 16419 0.7 0.861174
Target:  5'- cGCAuCGCAGACGGCGagcCGcUGCG-CCa -3'
miRNA:   3'- -UGUuGCGUCUGUUGUa--GUuACGCuGG- -5'
26828 3' -47.7 NC_005809.1 + 17150 0.7 0.823765
Target:  5'- uGCAGCGCAuGACGgaaAUCAuggGCGGCa -3'
miRNA:   3'- -UGUUGCGU-CUGUug-UAGUua-CGCUGg -5'
26828 3' -47.7 NC_005809.1 + 17321 0.67 0.950255
Target:  5'- aGCAGCGCGaGCAACA--GGUGCG-CUu -3'
miRNA:   3'- -UGUUGCGUcUGUUGUagUUACGCuGG- -5'
26828 3' -47.7 NC_005809.1 + 17789 0.68 0.908856
Target:  5'- uCAACGCGGGCA---UCGAgGaCGACCc -3'
miRNA:   3'- uGUUGCGUCUGUuguAGUUaC-GCUGG- -5'
26828 3' -47.7 NC_005809.1 + 17844 0.7 0.842982
Target:  5'- gGCcGCGCAGGCGcgGUgGAaGCGGCCc -3'
miRNA:   3'- -UGuUGCGUCUGUugUAgUUaCGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 18100 0.69 0.889524
Target:  5'- -uGGCGCAGGcCAagcagcaggucgucgGCGUCAAUGUcGCCg -3'
miRNA:   3'- ugUUGCGUCU-GU---------------UGUAGUUACGcUGG- -5'
26828 3' -47.7 NC_005809.1 + 18148 0.66 0.967068
Target:  5'- gGCucGCGCAGcuugccgaaAUAGCccuguuUCAGUGCGAUCa -3'
miRNA:   3'- -UGu-UGCGUC---------UGUUGu-----AGUUACGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 18465 0.74 0.65024
Target:  5'- cGCGGCGCcGGCGGCGUCGgccgauucguccaccGUGaUGACCa -3'
miRNA:   3'- -UGUUGCGuCUGUUGUAGU---------------UAC-GCUGG- -5'
26828 3' -47.7 NC_005809.1 + 18713 0.72 0.748721
Target:  5'- aGCAGCGCAucgguacGGCGGCAcgggaugccgUCGAacGCGACCa -3'
miRNA:   3'- -UGUUGCGU-------CUGUUGU----------AGUUa-CGCUGG- -5'
26828 3' -47.7 NC_005809.1 + 18969 0.72 0.749838
Target:  5'- gGCGAUGCGGACGACGUaacgcCAGUcGCGcagggucagGCCg -3'
miRNA:   3'- -UGUUGCGUCUGUUGUA-----GUUA-CGC---------UGG- -5'
26828 3' -47.7 NC_005809.1 + 19046 0.69 0.886366
Target:  5'- aGCGGcCGCcGGCGGCGUCGAUcaGCGugUc -3'
miRNA:   3'- -UGUU-GCGuCUGUUGUAGUUA--CGCugG- -5'
26828 3' -47.7 NC_005809.1 + 19240 0.67 0.933847
Target:  5'- cGCGGCGuCAGGCccaugaacuucucGGCGUCGAUGCuggaaucGCCg -3'
miRNA:   3'- -UGUUGC-GUCUG-------------UUGUAGUUACGc------UGG- -5'
26828 3' -47.7 NC_005809.1 + 19754 0.68 0.918386
Target:  5'- gGCAGCGCGG-CGAaGUCGggccaguccggcaccAUGCuGACCg -3'
miRNA:   3'- -UGUUGCGUCuGUUgUAGU---------------UACG-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.