Results 21 - 40 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 8448 | 0.7 | 0.861174 |
Target: 5'- uCGGCGCGauGuCGGCGUCGAgGUGGCCu -3' miRNA: 3'- uGUUGCGU--CuGUUGUAGUUaCGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 8570 | 0.79 | 0.361737 |
Target: 5'- gGCAGCGaCAGGCGcgACAcgacggUCAcgGCGACCg -3' miRNA: 3'- -UGUUGC-GUCUGU--UGU------AGUuaCGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 8576 | 0.67 | 0.950255 |
Target: 5'- gGCGuCGUAGGCcGCGc--GUGCGGCCu -3' miRNA: 3'- -UGUuGCGUCUGuUGUaguUACGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 9336 | 0.68 | 0.92481 |
Target: 5'- cGCGGCGgGcGGCGGCAUCcuuuugcaguugcuuGAugaUGCGGCCg -3' miRNA: 3'- -UGUUGCgU-CUGUUGUAG---------------UU---ACGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 9490 | 0.66 | 0.967068 |
Target: 5'- -gGAUGUAGGCcgccGCGUCGcugcGCGACCc -3' miRNA: 3'- ugUUGCGUCUGu---UGUAGUua--CGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 9513 | 0.69 | 0.87826 |
Target: 5'- cCGugGCGaACAgugGCAUCAugcUGCGGCCc -3' miRNA: 3'- uGUugCGUcUGU---UGUAGUu--ACGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 9707 | 0.67 | 0.954907 |
Target: 5'- -gGGCGC-GACAAUcUCGGcgccgaccgucUGCGGCCa -3' miRNA: 3'- ugUUGCGuCUGUUGuAGUU-----------ACGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 9910 | 0.66 | 0.959255 |
Target: 5'- gGCuucACGuCGGGCAGCuUCGcgGCG-CCg -3' miRNA: 3'- -UGu--UGC-GUCUGUUGuAGUuaCGCuGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 9951 | 0.68 | 0.908856 |
Target: 5'- gACAGCGaccGCGGCGUCGcgGCccuuGACCg -3' miRNA: 3'- -UGUUGCgucUGUUGUAGUuaCG----CUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 9995 | 0.66 | 0.967068 |
Target: 5'- cACAGCGUcGGCGguguccugauACGUCGGaGCGGCa -3' miRNA: 3'- -UGUUGCGuCUGU----------UGUAGUUaCGCUGg -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 10062 | 0.68 | 0.922279 |
Target: 5'- aAUAGCGUccgAGGCGuCGUCGggGCGAgCCg -3' miRNA: 3'- -UGUUGCG---UCUGUuGUAGUuaCGCU-GG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 11355 | 0.66 | 0.970212 |
Target: 5'- uGCAguACGguGGCGaccugcucgcccgGCAccUCGGUGgCGACCu -3' miRNA: 3'- -UGU--UGCguCUGU-------------UGU--AGUUAC-GCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 12622 | 0.68 | 0.908856 |
Target: 5'- cCGACGCGcuCGGCAUCGcUGCuGCCg -3' miRNA: 3'- uGUUGCGUcuGUUGUAGUuACGcUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 13020 | 0.77 | 0.439569 |
Target: 5'- cGCAGCGCAGugGCGACGgccucgUCAucgcguugcuugaGUGCGGCCg -3' miRNA: 3'- -UGUUGCGUC--UGUUGU------AGU-------------UACGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 13390 | 0.69 | 0.87826 |
Target: 5'- cCAGCGCgcgguuguAGGCGGCAUCGuUGCGGu- -3' miRNA: 3'- uGUUGCG--------UCUGUUGUAGUuACGCUgg -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 13469 | 0.66 | 0.967068 |
Target: 5'- cGCggUGuCGGGCAugAccugggCGAUGcCGACCg -3' miRNA: 3'- -UGuuGC-GUCUGUugUa-----GUUAC-GCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 13613 | 0.71 | 0.793221 |
Target: 5'- aACcuUGCcGACAGCAUCGGUaGCGGCa -3' miRNA: 3'- -UGuuGCGuCUGUUGUAGUUA-CGCUGg -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 13723 | 0.7 | 0.852212 |
Target: 5'- cGCGGCGCugGGACAGCuucggCAAgucCGGCCg -3' miRNA: 3'- -UGUUGCG--UCUGUUGua---GUUac-GCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 13865 | 0.69 | 0.894171 |
Target: 5'- cGCGuGCGCcGACAGCAUCGAccuUGUGAa- -3' miRNA: 3'- -UGU-UGCGuCUGUUGUAGUU---ACGCUgg -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 14404 | 0.68 | 0.928512 |
Target: 5'- -gGGCGUGGGCAACggcgugGUCGAUcUGACCa -3' miRNA: 3'- ugUUGCGUCUGUUG------UAGUUAcGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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