Results 21 - 40 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 26411 | 0.72 | 0.727259 |
Target: 5'- cCGACGCGGuaacgcccacCAcCAUCAgcGUGCGGCCg -3' miRNA: 3'- uGUUGCGUCu---------GUuGUAGU--UACGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 14713 | 0.72 | 0.738611 |
Target: 5'- gGCgAGCGCGGACAcguucuugaGCAgCGGcGCGGCCg -3' miRNA: 3'- -UG-UUGCGUCUGU---------UGUaGUUaCGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 18713 | 0.72 | 0.748721 |
Target: 5'- aGCAGCGCAucgguacGGCGGCAcgggaugccgUCGAacGCGACCa -3' miRNA: 3'- -UGUUGCGU-------CUGUUGU----------AGUUa-CGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 18969 | 0.72 | 0.749838 |
Target: 5'- gGCGAUGCGGACGACGUaacgcCAGUcGCGcagggucagGCCg -3' miRNA: 3'- -UGUUGCGUCUGUUGUA-----GUUA-CGC---------UGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 38228 | 0.72 | 0.760927 |
Target: 5'- gGCAACGCAacGGcCAGCAUCAAggcugGC-ACCa -3' miRNA: 3'- -UGUUGCGU--CU-GUUGUAGUUa----CGcUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 40460 | 0.71 | 0.771863 |
Target: 5'- aACGGCGCAaucuauaccGACGACAcg---GCGACCa -3' miRNA: 3'- -UGUUGCGU---------CUGUUGUaguuaCGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 21950 | 0.71 | 0.782632 |
Target: 5'- -gAGCGCAGcCGACAcCGAccUGCGACg -3' miRNA: 3'- ugUUGCGUCuGUUGUaGUU--ACGCUGg -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 27558 | 0.71 | 0.782632 |
Target: 5'- cCAACGCGGACAcCAUCGAgucuauugGCaacGCCa -3' miRNA: 3'- uGUUGCGUCUGUuGUAGUUa-------CGc--UGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 23651 | 0.71 | 0.782632 |
Target: 5'- cCGGCgGCGGGCAGCAacugCAccagGCGACCc -3' miRNA: 3'- uGUUG-CGUCUGUUGUa---GUua--CGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 13613 | 0.71 | 0.793221 |
Target: 5'- aACcuUGCcGACAGCAUCGGUaGCGGCa -3' miRNA: 3'- -UGuuGCGuCUGUUGUAGUUA-CGCUGg -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 34760 | 0.71 | 0.793221 |
Target: 5'- gGCAACGaGGGCAACAUCca-GCG-CCu -3' miRNA: 3'- -UGUUGCgUCUGUUGUAGuuaCGCuGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 31502 | 0.71 | 0.802584 |
Target: 5'- cGCGACcCGGACAcguucgaGCAguucgucgcCAAUGCGGCCg -3' miRNA: 3'- -UGUUGcGUCUGU-------UGUa--------GUUACGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 20323 | 0.71 | 0.803614 |
Target: 5'- uGCGAUGCGGGCuggccuucaGugGUCGuUGCGGCUu -3' miRNA: 3'- -UGUUGCGUCUG---------UugUAGUuACGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 37299 | 0.71 | 0.803614 |
Target: 5'- gACAACGCc-GCgAACAUCAAcacgGUGGCCg -3' miRNA: 3'- -UGUUGCGucUG-UUGUAGUUa---CGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 21454 | 0.71 | 0.8138 |
Target: 5'- uGCGGCGgGGGCGGCAg-GAUGuUGGCCu -3' miRNA: 3'- -UGUUGCgUCUGUUGUagUUAC-GCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 28284 | 0.7 | 0.823765 |
Target: 5'- aACGACGUGGGCcGCAUCGccgacagcaugGUGCagcaGGCCa -3' miRNA: 3'- -UGUUGCGUCUGuUGUAGU-----------UACG----CUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 17150 | 0.7 | 0.823765 |
Target: 5'- uGCAGCGCAuGACGgaaAUCAuggGCGGCa -3' miRNA: 3'- -UGUUGCGU-CUGUug-UAGUua-CGCUGg -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 3744 | 0.7 | 0.823765 |
Target: 5'- -gGugGUGGGC-ACGUCGGUGCcGCCg -3' miRNA: 3'- ugUugCGUCUGuUGUAGUUACGcUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 22295 | 0.7 | 0.832534 |
Target: 5'- cACGGCGUcgaagucGGGCAGCA-CGAUGCugcuGGCCg -3' miRNA: 3'- -UGUUGCG-------UCUGUUGUaGUUACG----CUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 16251 | 0.7 | 0.842982 |
Target: 5'- gAUAugGCGGAUGGCGUUGGccucgcgcGCGGCCa -3' miRNA: 3'- -UGUugCGUCUGUUGUAGUUa-------CGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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