Results 1 - 20 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 37449 | 1.14 | 0.002008 |
Target: 5'- gACAACGCAGACAACAUCAAUGCGACCg -3' miRNA: 3'- -UGUUGCGUCUGUUGUAGUUACGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 37509 | 0.83 | 0.228749 |
Target: 5'- gGCAAUGCcGACAACAUCAAUGCaGCg -3' miRNA: 3'- -UGUUGCGuCUGUUGUAGUUACGcUGg -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 8570 | 0.79 | 0.361737 |
Target: 5'- gGCAGCGaCAGGCGcgACAcgacggUCAcgGCGACCg -3' miRNA: 3'- -UGUUGC-GUCUGU--UGU------AGUuaCGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 13020 | 0.77 | 0.439569 |
Target: 5'- cGCAGCGCAGugGCGACGgccucgUCAucgcguugcuugaGUGCGGCCg -3' miRNA: 3'- -UGUUGCGUC--UGUUGU------AGU-------------UACGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 5441 | 0.77 | 0.472616 |
Target: 5'- gGCGGCGUGGGCGAgGUCGGUauCGACCa -3' miRNA: 3'- -UGUUGCGUCUGUUgUAGUUAc-GCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 37954 | 0.76 | 0.539838 |
Target: 5'- gGCAGCGCGGGcCAACAUUGGccugGCuGACCu -3' miRNA: 3'- -UGUUGCGUCU-GUUGUAGUUa---CG-CUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 27306 | 0.75 | 0.562991 |
Target: 5'- gGCGACaGCGGGCAACuGUUuGUGCGGCa -3' miRNA: 3'- -UGUUG-CGUCUGUUG-UAGuUACGCUGg -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 4240 | 0.75 | 0.574669 |
Target: 5'- -aGACGUAGAUGGCguaGUCGGUGcCGGCCg -3' miRNA: 3'- ugUUGCGUCUGUUG---UAGUUAC-GCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 29968 | 0.75 | 0.574669 |
Target: 5'- cGCGGCGCAcGACGGCcUgGAUGCaGCCg -3' miRNA: 3'- -UGUUGCGU-CUGUUGuAgUUACGcUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 37555 | 0.75 | 0.579356 |
Target: 5'- uCAACGCAGuagucgguaaugccaACAAUAUCAAUGCGGu- -3' miRNA: 3'- uGUUGCGUC---------------UGUUGUAGUUACGCUgg -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 36981 | 0.74 | 0.609989 |
Target: 5'- aACGAgGCGGACAucgACA-CGGUgGCGGCCa -3' miRNA: 3'- -UGUUgCGUCUGU---UGUaGUUA-CGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 37398 | 0.74 | 0.621822 |
Target: 5'- gACGACguGCAGGCGgugGCAggCAAUGCGGCa -3' miRNA: 3'- -UGUUG--CGUCUGU---UGUa-GUUACGCUGg -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 34013 | 0.74 | 0.621822 |
Target: 5'- uACGACGCccaGGAUGAgGUCGAgcGCGGCCu -3' miRNA: 3'- -UGUUGCG---UCUGUUgUAGUUa-CGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 18465 | 0.74 | 0.65024 |
Target: 5'- cGCGGCGCcGGCGGCGUCGgccgauucguccaccGUGaUGACCa -3' miRNA: 3'- -UGUUGCGuCUGUUGUAGU---------------UAC-GCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 31070 | 0.73 | 0.669135 |
Target: 5'- cCAGCGCAGGCGcuGCccuuugcgguGUCGcagGCGACCa -3' miRNA: 3'- uGUUGCGUCUGU--UG----------UAGUua-CGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 37158 | 0.73 | 0.680895 |
Target: 5'- gGCAACGUGGACAcgguugcugaaaACAUCg--GCGACg -3' miRNA: 3'- -UGUUGCGUCUGU------------UGUAGuuaCGCUGg -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 31411 | 0.73 | 0.692601 |
Target: 5'- cCAGCGCAcGCAACGUgCGcagGCGGCCc -3' miRNA: 3'- uGUUGCGUcUGUUGUA-GUua-CGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 26882 | 0.73 | 0.70424 |
Target: 5'- aGCAAgGCuGACGGCA---GUGUGACCu -3' miRNA: 3'- -UGUUgCGuCUGUUGUaguUACGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 7204 | 0.72 | 0.715797 |
Target: 5'- gACAGCGCGauguccacGGCAGCAUC--UGCG-CCg -3' miRNA: 3'- -UGUUGCGU--------CUGUUGUAGuuACGCuGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 26411 | 0.72 | 0.727259 |
Target: 5'- cCGACGCGGuaacgcccacCAcCAUCAgcGUGCGGCCg -3' miRNA: 3'- uGUUGCGUCu---------GUuGUAGU--UACGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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