Results 1 - 20 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 9910 | 0.66 | 0.959255 |
Target: 5'- gGCuucACGuCGGGCAGCuUCGcgGCG-CCg -3' miRNA: 3'- -UGu--UGC-GUCUGUUGuAGUuaCGCuGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 23097 | 0.66 | 0.967068 |
Target: 5'- cCGACGCcaacGGCGGCGccCAcgGCGACa -3' miRNA: 3'- uGUUGCGu---CUGUUGUa-GUuaCGCUGg -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 33383 | 0.66 | 0.963306 |
Target: 5'- cGCcgaGCAGGcCAACGUCGAcgGCG-CCa -3' miRNA: 3'- -UGuugCGUCU-GUUGUAGUUa-CGCuGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 23396 | 0.66 | 0.959255 |
Target: 5'- uCGACGCcGGCGGCA-CGGgcaGCGACa -3' miRNA: 3'- uGUUGCGuCUGUUGUaGUUa--CGCUGg -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 18148 | 0.66 | 0.967068 |
Target: 5'- gGCucGCGCAGcuugccgaaAUAGCccuguuUCAGUGCGAUCa -3' miRNA: 3'- -UGu-UGCGUC---------UGUUGu-----AGUUACGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 36592 | 0.66 | 0.973756 |
Target: 5'- aGCGACGCAGACggUGUgGAauccaccuUGACCc -3' miRNA: 3'- -UGUUGCGUCUGuuGUAgUUac------GCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 41582 | 0.66 | 0.973756 |
Target: 5'- -uGGCGCGGGCAGCGggcugaCGGUGaagGGCUg -3' miRNA: 3'- ugUUGCGUCUGUUGUa-----GUUACg--CUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 20607 | 0.66 | 0.958834 |
Target: 5'- cCuuCGcCAGGCGGCGUCGcaggucgGUGuCGGCCu -3' miRNA: 3'- uGuuGC-GUCUGUUGUAGU-------UAC-GCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 23193 | 0.66 | 0.959255 |
Target: 5'- gACAGCaGCAGGuCGGCcucGUCGGUGaauuCGGCCu -3' miRNA: 3'- -UGUUG-CGUCU-GUUG---UAGUUAC----GCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 31285 | 0.66 | 0.973756 |
Target: 5'- cCGACGU-GGCAGCGaagCcugGCGACCg -3' miRNA: 3'- uGUUGCGuCUGUUGUa--GuuaCGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 11355 | 0.66 | 0.970212 |
Target: 5'- uGCAguACGguGGCGaccugcucgcccgGCAccUCGGUGgCGACCu -3' miRNA: 3'- -UGU--UGCguCUGU-------------UGU--AGUUAC-GCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 14745 | 0.66 | 0.967068 |
Target: 5'- gGCAguacGCGCAGcauuggcgcGCAGCGugUCGGUGuCGAUCu -3' miRNA: 3'- -UGU----UGCGUC---------UGUUGU--AGUUAC-GCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 13469 | 0.66 | 0.967068 |
Target: 5'- cGCggUGuCGGGCAugAccugggCGAUGcCGACCg -3' miRNA: 3'- -UGuuGC-GUCUGUugUa-----GUUAC-GCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 27596 | 0.66 | 0.960911 |
Target: 5'- gGCGGCGcCAGAUGGCGUggucgucgcccuugaCGAUG-GGCCg -3' miRNA: 3'- -UGUUGC-GUCUGUUGUA---------------GUUACgCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 30722 | 0.66 | 0.959255 |
Target: 5'- -uGGCGCGGGguucgcccaggcCAACcgCGGcGCGGCCg -3' miRNA: 3'- ugUUGCGUCU------------GUUGuaGUUaCGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 7380 | 0.66 | 0.959255 |
Target: 5'- cCAGCgGCGGGCAc---CGcgGCGACCu -3' miRNA: 3'- uGUUG-CGUCUGUuguaGUuaCGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 4882 | 0.66 | 0.970548 |
Target: 5'- cCAGCGCGG-CGACg-----GCGGCCu -3' miRNA: 3'- uGUUGCGUCuGUUGuaguuaCGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 1460 | 0.66 | 0.967068 |
Target: 5'- gACGGCGCGGuCGGCGgccUCcugGCaGGCCg -3' miRNA: 3'- -UGUUGCGUCuGUUGU---AGuuaCG-CUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 15058 | 0.66 | 0.973447 |
Target: 5'- -uGAUGCGGGCAAUGUucgacugaaauugCAGgcugcuuugcUGCGACCg -3' miRNA: 3'- ugUUGCGUCUGUUGUA-------------GUU----------ACGCUGG- -5' |
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26828 | 3' | -47.7 | NC_005809.1 | + | 29284 | 0.66 | 0.967068 |
Target: 5'- gACGugGUAGGCGACGaac-UGCuGGCCc -3' miRNA: 3'- -UGUugCGUCUGUUGUaguuACG-CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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