Results 1 - 20 of 137 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 13390 | 0.69 | 0.87826 |
Target: 5'- cCAGCGCgcgguuguAGGCGGCAUCGuUGCGGu- -3' miRNA: 3'- uGUUGCG--------UCUGUUGUAGUuACGCUgg -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 21454 | 0.71 | 0.8138 |
Target: 5'- uGCGGCGgGGGCGGCAg-GAUGuUGGCCu -3' miRNA: 3'- -UGUUGCgUCUGUUGUagUUAC-GCUGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 3744 | 0.7 | 0.823765 |
Target: 5'- -gGugGUGGGC-ACGUCGGUGCcGCCg -3' miRNA: 3'- ugUugCGUCUGuUGUAGUUACGcUGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 22295 | 0.7 | 0.832534 |
Target: 5'- cACGGCGUcgaagucGGGCAGCA-CGAUGCugcuGGCCg -3' miRNA: 3'- -UGUUGCG-------UCUGUUGUaGUUACG----CUGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 16251 | 0.7 | 0.842982 |
Target: 5'- gAUAugGCGGAUGGCGUUGGccucgcgcGCGGCCa -3' miRNA: 3'- -UGUugCGUCUGUUGUAGUUa-------CGCUGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 24557 | 0.7 | 0.852212 |
Target: 5'- cGCAGCGCGG-CGAUggCGAgGcCGGCCa -3' miRNA: 3'- -UGUUGCGUCuGUUGuaGUUaC-GCUGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 4452 | 0.69 | 0.86986 |
Target: 5'- cCAGCGguGGCAcCGUC-AUGCacaacGACCg -3' miRNA: 3'- uGUUGCguCUGUuGUAGuUACG-----CUGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 9513 | 0.69 | 0.87826 |
Target: 5'- cCGugGCGaACAgugGCAUCAugcUGCGGCCc -3' miRNA: 3'- uGUugCGUcUGU---UGUAGUu--ACGCUGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 2375 | 0.69 | 0.87826 |
Target: 5'- cACGugGCAGACGcCcgC-GUGCGuACCc -3' miRNA: 3'- -UGUugCGUCUGUuGuaGuUACGC-UGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 20323 | 0.71 | 0.803614 |
Target: 5'- uGCGAUGCGGGCuggccuucaGugGUCGuUGCGGCUu -3' miRNA: 3'- -UGUUGCGUCUG---------UugUAGUuACGCUGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 13613 | 0.71 | 0.793221 |
Target: 5'- aACcuUGCcGACAGCAUCGGUaGCGGCa -3' miRNA: 3'- -UGuuGCGuCUGUUGUAGUUA-CGCUGg -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 23651 | 0.71 | 0.782632 |
Target: 5'- cCGGCgGCGGGCAGCAacugCAccagGCGACCc -3' miRNA: 3'- uGUUG-CGUCUGUUGUa---GUua--CGCUGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 4240 | 0.75 | 0.574669 |
Target: 5'- -aGACGUAGAUGGCguaGUCGGUGcCGGCCg -3' miRNA: 3'- ugUUGCGUCUGUUG---UAGUUAC-GCUGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 29968 | 0.75 | 0.574669 |
Target: 5'- cGCGGCGCAcGACGGCcUgGAUGCaGCCg -3' miRNA: 3'- -UGUUGCGU-CUGUUGuAgUUACGcUGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 18465 | 0.74 | 0.65024 |
Target: 5'- cGCGGCGCcGGCGGCGUCGgccgauucguccaccGUGaUGACCa -3' miRNA: 3'- -UGUUGCGuCUGUUGUAGU---------------UAC-GCUGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 26882 | 0.73 | 0.70424 |
Target: 5'- aGCAAgGCuGACGGCA---GUGUGACCu -3' miRNA: 3'- -UGUUgCGuCUGUUGUaguUACGCUGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 7204 | 0.72 | 0.715797 |
Target: 5'- gACAGCGCGauguccacGGCAGCAUC--UGCG-CCg -3' miRNA: 3'- -UGUUGCGU--------CUGUUGUAGuuACGCuGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 18713 | 0.72 | 0.748721 |
Target: 5'- aGCAGCGCAucgguacGGCGGCAcgggaugccgUCGAacGCGACCa -3' miRNA: 3'- -UGUUGCGU-------CUGUUGU----------AGUUa-CGCUGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 18969 | 0.72 | 0.749838 |
Target: 5'- gGCGAUGCGGACGACGUaacgcCAGUcGCGcagggucagGCCg -3' miRNA: 3'- -UGUUGCGUCUGUUGUA-----GUUA-CGC---------UGG- -5' |
|||||||
26828 | 3' | -47.7 | NC_005809.1 | + | 40460 | 0.71 | 0.771863 |
Target: 5'- aACGGCGCAaucuauaccGACGACAcg---GCGACCa -3' miRNA: 3'- -UGUUGCGU---------CUGUUGUaguuaCGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home